miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30158 5' -53.6 NC_006273.1 + 589 0.67 0.98023
Target:  5'- -gUCCACCuaggagggUGCGCGcucggggacCCAGUCCGCGg -3'
miRNA:   3'- caGGGUGGca------AUGCGU---------GGUUAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 5834 0.72 0.83029
Target:  5'- -cCCCugCG-UAUGUACCAGUCCAa- -3'
miRNA:   3'- caGGGugGCaAUGCGUGGUUAGGUgc -5'
30158 5' -53.6 NC_006273.1 + 7539 0.71 0.883322
Target:  5'- -aCCCAUCGUguacucuCGCACCAc-CCACGa -3'
miRNA:   3'- caGGGUGGCAau-----GCGUGGUuaGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 8900 0.68 0.970299
Target:  5'- -aCCCACCGUcACGguCCGAgcacaUCCAa- -3'
miRNA:   3'- caGGGUGGCAaUGCguGGUU-----AGGUgc -5'
30158 5' -53.6 NC_006273.1 + 11852 0.66 0.984147
Target:  5'- cUCCaCGCCGcggcaccAUGCGCCAGUCCuauCGc -3'
miRNA:   3'- cAGG-GUGGCaa-----UGCGUGGUUAGGu--GC- -5'
30158 5' -53.6 NC_006273.1 + 14115 0.72 0.838443
Target:  5'- -gCCgGCUGUuucUGCGCACCGGUCCGa- -3'
miRNA:   3'- caGGgUGGCA---AUGCGUGGUUAGGUgc -5'
30158 5' -53.6 NC_006273.1 + 17694 0.7 0.909006
Target:  5'- cGUCCCACCcccuggGC-CACCAG-CCGCGa -3'
miRNA:   3'- -CAGGGUGGcaa---UGcGUGGUUaGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 23249 0.66 0.991369
Target:  5'- -cCCCuCCGUaa-GCGCCGacgaggaacuGUCCGCGa -3'
miRNA:   3'- caGGGuGGCAaugCGUGGU----------UAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 26123 0.67 0.973061
Target:  5'- --gCCGCCGg-GCGCugCGGUCC-CGa -3'
miRNA:   3'- cagGGUGGCaaUGCGugGUUAGGuGC- -5'
30158 5' -53.6 NC_006273.1 + 28075 0.7 0.92049
Target:  5'- uGUCgCCGCCGUcACcacCGCCGAUCCGuCGa -3'
miRNA:   3'- -CAG-GGUGGCAaUGc--GUGGUUAGGU-GC- -5'
30158 5' -53.6 NC_006273.1 + 28870 0.69 0.935983
Target:  5'- aUCCCGuccuUCGUcGCGCACCAAgcgCCAgCGa -3'
miRNA:   3'- cAGGGU----GGCAaUGCGUGGUUa--GGU-GC- -5'
30158 5' -53.6 NC_006273.1 + 31988 0.67 0.98227
Target:  5'- -aUCCGCUGUUGCGCgACCcgcgcgCCACc -3'
miRNA:   3'- caGGGUGGCAAUGCG-UGGuua---GGUGc -5'
30158 5' -53.6 NC_006273.1 + 33064 0.67 0.98304
Target:  5'- --aCCGCCGUcgggUGCGCGCCugcucgucaucgCCGCGc -3'
miRNA:   3'- cagGGUGGCA----AUGCGUGGuua---------GGUGC- -5'
30158 5' -53.6 NC_006273.1 + 33117 0.68 0.964179
Target:  5'- -cCCCACgGUgcuuauaACGCGCCg--CCGCGg -3'
miRNA:   3'- caGGGUGgCAa------UGCGUGGuuaGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 38746 0.67 0.98227
Target:  5'- aGUgCCACCGU--CGUGCCGGcCCACc -3'
miRNA:   3'- -CAgGGUGGCAauGCGUGGUUaGGUGc -5'
30158 5' -53.6 NC_006273.1 + 40898 0.68 0.970299
Target:  5'- uUCCCugaACCGgcgucgACGCACC-GUCUGCGc -3'
miRNA:   3'- cAGGG---UGGCaa----UGCGUGGuUAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 41358 0.66 0.991369
Target:  5'- -gCCCACgcgCGUUcGCGCGgCCAGUUgGCGg -3'
miRNA:   3'- caGGGUG---GCAA-UGCGU-GGUUAGgUGC- -5'
30158 5' -53.6 NC_006273.1 + 41766 0.67 0.97802
Target:  5'- -aCUCGCUGUUGCGCcACCucuUCCAg- -3'
miRNA:   3'- caGGGUGGCAAUGCG-UGGuu-AGGUgc -5'
30158 5' -53.6 NC_006273.1 + 42713 0.7 0.925886
Target:  5'- -aCCagCGCCGUguugGCGUGCCGGUCCAgGu -3'
miRNA:   3'- caGG--GUGGCAa---UGCGUGGUUAGGUgC- -5'
30158 5' -53.6 NC_006273.1 + 46916 0.72 0.854196
Target:  5'- cUCCCgagGCCGagGCGCGCU-AUCCGCGc -3'
miRNA:   3'- cAGGG---UGGCaaUGCGUGGuUAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.