miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30158 5' -53.6 NC_006273.1 + 152058 0.69 0.949404
Target:  5'- gGUCCCACC---ACGC-CgGGUCCACc -3'
miRNA:   3'- -CAGGGUGGcaaUGCGuGgUUAGGUGc -5'
30158 5' -53.6 NC_006273.1 + 7539 0.71 0.883322
Target:  5'- -aCCCAUCGUguacucuCGCACCAc-CCACGa -3'
miRNA:   3'- caGGGUGGCAau-----GCGUGGUuaGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 103899 0.7 0.902921
Target:  5'- aGUCgCgGCgGUUGCGCGCCAcggcguacgCCACGa -3'
miRNA:   3'- -CAG-GgUGgCAAUGCGUGGUua-------GGUGC- -5'
30158 5' -53.6 NC_006273.1 + 102823 0.7 0.909006
Target:  5'- cGUCgUCAUCGaaagGCGCGCCGgccgcGUCCACGg -3'
miRNA:   3'- -CAG-GGUGGCaa--UGCGUGGU-----UAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 42713 0.7 0.925886
Target:  5'- -aCCagCGCCGUguugGCGUGCCGGUCCAgGu -3'
miRNA:   3'- caGG--GUGGCAa---UGCGUGGUUAGGUgC- -5'
30158 5' -53.6 NC_006273.1 + 28870 0.69 0.935983
Target:  5'- aUCCCGuccuUCGUcGCGCACCAAgcgCCAgCGa -3'
miRNA:   3'- cAGGGU----GGCAaUGCGUGGUUa--GGU-GC- -5'
30158 5' -53.6 NC_006273.1 + 206071 0.69 0.940685
Target:  5'- -cUCCACCGgcgucgGCACuCGAUCCGCGu -3'
miRNA:   3'- caGGGUGGCaaug--CGUG-GUUAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 64773 0.69 0.940685
Target:  5'- -gCCCGCCGgcggGCgGCuGCCGGUCUACa -3'
miRNA:   3'- caGGGUGGCaa--UG-CG-UGGUUAGGUGc -5'
30158 5' -53.6 NC_006273.1 + 94251 0.69 0.949404
Target:  5'- uUCCgGCCGU---GCugCGGUCCGCa -3'
miRNA:   3'- cAGGgUGGCAaugCGugGUUAGGUGc -5'
30158 5' -53.6 NC_006273.1 + 46916 0.72 0.854196
Target:  5'- cUCCCgagGCCGagGCGCGCU-AUCCGCGc -3'
miRNA:   3'- cAGGG---UGGCaaUGCGUGGuUAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 94355 0.72 0.838443
Target:  5'- cGUCCCACCGcccuggaGCACC-AUCCGgGg -3'
miRNA:   3'- -CAGGGUGGCaaug---CGUGGuUAGGUgC- -5'
30158 5' -53.6 NC_006273.1 + 5834 0.72 0.83029
Target:  5'- -cCCCugCG-UAUGUACCAGUCCAa- -3'
miRNA:   3'- caGGGugGCaAUGCGUGGUUAGGUgc -5'
30158 5' -53.6 NC_006273.1 + 164506 0.83 0.290462
Target:  5'- -gUCCACCG-UACGCGCCAGUUCGCGa -3'
miRNA:   3'- caGGGUGGCaAUGCGUGGUUAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 121724 0.77 0.611296
Target:  5'- aGUCCCgagACCGUgagACGCGCCug-CCACa -3'
miRNA:   3'- -CAGGG---UGGCAa--UGCGUGGuuaGGUGc -5'
30158 5' -53.6 NC_006273.1 + 228394 0.76 0.659603
Target:  5'- uGUCCCACCGggauaaacaucACGCAUCGAgaaCCGCGg -3'
miRNA:   3'- -CAGGGUGGCaa---------UGCGUGGUUa--GGUGC- -5'
30158 5' -53.6 NC_006273.1 + 168089 0.75 0.701493
Target:  5'- aGUCCCGCCG--GCGCGCCAGcauguaggUCACGu -3'
miRNA:   3'- -CAGGGUGGCaaUGCGUGGUUa-------GGUGC- -5'
30158 5' -53.6 NC_006273.1 + 74825 0.75 0.721128
Target:  5'- -gCCCACCGcu-CGUACCAG-CCGCGg -3'
miRNA:   3'- caGGGUGGCaauGCGUGGUUaGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 78865 0.75 0.725022
Target:  5'- -gCCCuugacgaacucgcagGCCGUcuUGCGCACCAgAUCCACGc -3'
miRNA:   3'- caGGG---------------UGGCA--AUGCGUGGU-UAGGUGC- -5'
30158 5' -53.6 NC_006273.1 + 184292 0.74 0.76877
Target:  5'- uUCCCGgCGUgGgGCACCAgcGUCCACa -3'
miRNA:   3'- cAGGGUgGCAaUgCGUGGU--UAGGUGc -5'
30158 5' -53.6 NC_006273.1 + 187539 0.73 0.804816
Target:  5'- cUCCCGCCGUacgGCGCcgagGCCcagcgacgacaGGUCCGCGa -3'
miRNA:   3'- cAGGGUGGCAa--UGCG----UGG-----------UUAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.