miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30159 3' -54.9 NC_006273.1 + 227424 0.66 0.982529
Target:  5'- -cCGGcucaGGCGGCCUUGUCGccgCCACu- -3'
miRNA:   3'- caGCUa---CUGCCGGAGCAGUa--GGUGcg -5'
30159 3' -54.9 NC_006273.1 + 158866 0.66 0.982529
Target:  5'- -cCGA--GCGGCgaCGUgCAUUCGCGCa -3'
miRNA:   3'- caGCUacUGCCGgaGCA-GUAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 93877 0.66 0.982529
Target:  5'- -----aGACGGCgUCGUCAaccUCCAgGUc -3'
miRNA:   3'- cagcuaCUGCCGgAGCAGU---AGGUgCG- -5'
30159 3' -54.9 NC_006273.1 + 66569 0.66 0.981355
Target:  5'- ---uGUGACGGCagcuacgaagagggaUUCGUCGUCaUACGCg -3'
miRNA:   3'- cagcUACUGCCG---------------GAGCAGUAG-GUGCG- -5'
30159 3' -54.9 NC_006273.1 + 74860 0.66 0.98054
Target:  5'- cGUCGAUcaccaGCGGUCgCGUCGgcaccggagaaUCCACGUc -3'
miRNA:   3'- -CAGCUAc----UGCCGGaGCAGU-----------AGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 196852 0.66 0.98054
Target:  5'- -cCGcgGugGuGCC-CGUCGUCCuCGUc -3'
miRNA:   3'- caGCuaCugC-CGGaGCAGUAGGuGCG- -5'
30159 3' -54.9 NC_006273.1 + 158346 0.66 0.98054
Target:  5'- --gGAgcgcaaGGCCgagCGUCGUUCGCGCg -3'
miRNA:   3'- cagCUacug--CCGGa--GCAGUAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 153615 0.66 0.979269
Target:  5'- gGUCGcgGGUGGCCggCGUCaGcguucgcagcccggcUCCGCGCa -3'
miRNA:   3'- -CAGCuaCUGCCGGa-GCAG-U---------------AGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 76093 0.66 0.978388
Target:  5'- ---uAUGugGGCCggcaccggCGUCAUgagcaCCACGCc -3'
miRNA:   3'- cagcUACugCCGGa-------GCAGUA-----GGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 127002 0.66 0.978388
Target:  5'- -gCGGUGGCGGCCgg--CAUCaggagaaACGCc -3'
miRNA:   3'- caGCUACUGCCGGagcaGUAGg------UGCG- -5'
30159 3' -54.9 NC_006273.1 + 137769 0.66 0.978388
Target:  5'- -aUGgcGugGGCCacguacaucggCGUCGUCgACGCa -3'
miRNA:   3'- caGCuaCugCCGGa----------GCAGUAGgUGCG- -5'
30159 3' -54.9 NC_006273.1 + 119581 0.66 0.978388
Target:  5'- uUCGucUGGCGGCCU--UC-UUCACGCg -3'
miRNA:   3'- cAGCu-ACUGCCGGAgcAGuAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 214117 0.66 0.978388
Target:  5'- cGUCGuacUGGCGGCUgucaaaguccCGUUGUCCaaagGCGCg -3'
miRNA:   3'- -CAGCu--ACUGCCGGa---------GCAGUAGG----UGCG- -5'
30159 3' -54.9 NC_006273.1 + 120593 0.66 0.978388
Target:  5'- -cCGGUGGCGGCgaCGUUugggUUGCGCa -3'
miRNA:   3'- caGCUACUGCCGgaGCAGua--GGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 36871 0.66 0.977015
Target:  5'- gGUCGcgGaccGCGGagucggggagaagcuCCUCGUCAUCCucCGUg -3'
miRNA:   3'- -CAGCuaC---UGCC---------------GGAGCAGUAGGu-GCG- -5'
30159 3' -54.9 NC_006273.1 + 129666 0.66 0.976065
Target:  5'- -gCGAgGACGcccGCUUCuGUCGUCCGCGa -3'
miRNA:   3'- caGCUaCUGC---CGGAG-CAGUAGGUGCg -5'
30159 3' -54.9 NC_006273.1 + 28419 0.66 0.975333
Target:  5'- uUCGAUcGCaccgugguaauccaGGCCUauguccUGUCAUCCAUGCu -3'
miRNA:   3'- cAGCUAcUG--------------CCGGA------GCAGUAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 158643 0.66 0.973563
Target:  5'- --aGAgcACGGCCUCGUUggUgACGCg -3'
miRNA:   3'- cagCUacUGCCGGAGCAGuaGgUGCG- -5'
30159 3' -54.9 NC_006273.1 + 140084 0.66 0.973563
Target:  5'- uGUC-AUGGCGGCCcacCGUCGaCCccgaGCGCu -3'
miRNA:   3'- -CAGcUACUGCCGGa--GCAGUaGG----UGCG- -5'
30159 3' -54.9 NC_006273.1 + 50636 0.66 0.973303
Target:  5'- -aCGGUGACGGUgUUGUUuUCCGaagacguCGCg -3'
miRNA:   3'- caGCUACUGCCGgAGCAGuAGGU-------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.