Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30159 | 3' | -54.9 | NC_006273.1 | + | 153081 | 1.1 | 0.005278 |
Target: 5'- uGUCGAUGACGGCCUCGUCAUCCACGCc -3' miRNA: 3'- -CAGCUACUGCCGGAGCAGUAGGUGCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 87057 | 0.77 | 0.503531 |
Target: 5'- -gCGugccagGACGGCCUCGUCGU-CGCGCu -3' miRNA: 3'- caGCua----CUGCCGGAGCAGUAgGUGCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 165204 | 0.74 | 0.699219 |
Target: 5'- gGUCGuagccGCGGCaCagGUCGUCCACGCa -3' miRNA: 3'- -CAGCuac--UGCCG-GagCAGUAGGUGCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 39701 | 0.74 | 0.699219 |
Target: 5'- -aCGcgGACGGCUcCGUCGUCCGUGUg -3' miRNA: 3'- caGCuaCUGCCGGaGCAGUAGGUGCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 234593 | 0.74 | 0.699219 |
Target: 5'- -aCGcgGACGGCUcCGUCGUCCGUGUg -3' miRNA: 3'- caGCuaCUGCCGGaGCAGUAGGUGCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 72465 | 0.73 | 0.728201 |
Target: 5'- cGUCGGUGccgGCGGCCaCGUCcgUCACGg -3' miRNA: 3'- -CAGCUAC---UGCCGGaGCAGuaGGUGCg -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 65517 | 0.73 | 0.756481 |
Target: 5'- -gCGAUagcGGCGGCCUCuucuUCGUCCGCGg -3' miRNA: 3'- caGCUA---CUGCCGGAGc---AGUAGGUGCg -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 105654 | 0.73 | 0.756481 |
Target: 5'- -aCGgcGGCGGCCUugcUGUCcUCCGCGUg -3' miRNA: 3'- caGCuaCUGCCGGA---GCAGuAGGUGCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 175058 | 0.72 | 0.801437 |
Target: 5'- -gUGGUGGCGGCgUCGUCAg-UugGCg -3' miRNA: 3'- caGCUACUGCCGgAGCAGUagGugCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 185858 | 0.72 | 0.801437 |
Target: 5'- -aCGGUaGAUGaCCUCGUCuugCCACGCg -3' miRNA: 3'- caGCUA-CUGCcGGAGCAGua-GGUGCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 6635 | 0.72 | 0.809175 |
Target: 5'- uGUCGGgcGGCGGCCUCGUCucaCCGaugagacaccgacCGCa -3' miRNA: 3'- -CAGCUa-CUGCCGGAGCAGua-GGU-------------GCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 184251 | 0.72 | 0.813422 |
Target: 5'- aGUCGGUaGGCGucgauagcccucaccGCCUCGUCGUCCccuucccgGCGUg -3' miRNA: 3'- -CAGCUA-CUGC---------------CGGAGCAGUAGG--------UGCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 89544 | 0.71 | 0.842798 |
Target: 5'- -aCGAaacccAgGGCCUCGUCGUCCACa- -3' miRNA: 3'- caGCUac---UgCCGGAGCAGUAGGUGcg -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 93505 | 0.71 | 0.842798 |
Target: 5'- -gUGGUGAcgccgccgcCGGCCUCGUCGgucaucagaUCCACGa -3' miRNA: 3'- caGCUACU---------GCCGGAGCAGU---------AGGUGCg -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 35401 | 0.71 | 0.850557 |
Target: 5'- -aCGAaauUGuuGGCCUCGUCGgccucggCCACGUu -3' miRNA: 3'- caGCU---ACugCCGGAGCAGUa------GGUGCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 233406 | 0.7 | 0.879673 |
Target: 5'- -cCGcUGGCGGCgaCGUCGUCCccguCGCc -3' miRNA: 3'- caGCuACUGCCGgaGCAGUAGGu---GCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 38513 | 0.7 | 0.879673 |
Target: 5'- -cCGcUGGCGGCgaCGUCGUCCccguCGCc -3' miRNA: 3'- caGCuACUGCCGgaGCAGUAGGu---GCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 87317 | 0.7 | 0.879673 |
Target: 5'- -cCGGUG-CGGCCUCcaaaaUC-UCCACGCc -3' miRNA: 3'- caGCUACuGCCGGAGc----AGuAGGUGCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 7898 | 0.7 | 0.893007 |
Target: 5'- -aCGGUGGCGGCggacUGUCAgguaUCCGCGUg -3' miRNA: 3'- caGCUACUGCCGga--GCAGU----AGGUGCG- -5' |
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30159 | 3' | -54.9 | NC_006273.1 | + | 72282 | 0.69 | 0.899353 |
Target: 5'- gGUCGAUGACGcuGCCgaugaggCcgCCGCGCa -3' miRNA: 3'- -CAGCUACUGC--CGGagca---GuaGGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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