miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30159 3' -54.9 NC_006273.1 + 144567 0.67 0.970878
Target:  5'- -cCGGUgcgcGACGGCCUCGgucugcUCAUcgaccCCACGUc -3'
miRNA:   3'- caGCUA----CUGCCGGAGC------AGUA-----GGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 10221 0.67 0.970878
Target:  5'- cUCGGUGcAUGGacgcCGUCugGUCCACGCa -3'
miRNA:   3'- cAGCUAC-UGCCgga-GCAG--UAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 162077 0.67 0.970878
Target:  5'- -gCGGUcAUGGCCaaUCGUCGUCuccgaCACGCu -3'
miRNA:   3'- caGCUAcUGCCGG--AGCAGUAG-----GUGCG- -5'
30159 3' -54.9 NC_006273.1 + 213470 0.67 0.968002
Target:  5'- -cCGAUGccgGCGGCUgcagUUGUUGUCCGCGa -3'
miRNA:   3'- caGCUAC---UGCCGG----AGCAGUAGGUGCg -5'
30159 3' -54.9 NC_006273.1 + 125473 0.67 0.968002
Target:  5'- cUCaugGGCaGCCUCGUCcacUCCAUGCu -3'
miRNA:   3'- cAGcuaCUGcCGGAGCAGu--AGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 101616 0.67 0.967704
Target:  5'- cGUCG-UGACGGCCgCGUgAgugcagcUCCAUGg -3'
miRNA:   3'- -CAGCuACUGCCGGaGCAgU-------AGGUGCg -5'
30159 3' -54.9 NC_006273.1 + 18618 0.67 0.964931
Target:  5'- cGUCGu---CGGCCUCGUgGgcuauuaCCugGCa -3'
miRNA:   3'- -CAGCuacuGCCGGAGCAgUa------GGugCG- -5'
30159 3' -54.9 NC_006273.1 + 152338 0.67 0.964931
Target:  5'- uUUGGUGGCGGCagagccCGUCGUa-GCGCa -3'
miRNA:   3'- cAGCUACUGCCGga----GCAGUAggUGCG- -5'
30159 3' -54.9 NC_006273.1 + 178499 0.67 0.964931
Target:  5'- uGUCGuccaacagguUGACGGCUUCuUCGUCgGCGa -3'
miRNA:   3'- -CAGCu---------ACUGCCGGAGcAGUAGgUGCg -5'
30159 3' -54.9 NC_006273.1 + 99316 0.67 0.962992
Target:  5'- cGUCGucgGA-GGCCggugCGUCGUCCucaucuccgcucggaACGCg -3'
miRNA:   3'- -CAGCua-CUgCCGGa---GCAGUAGG---------------UGCG- -5'
30159 3' -54.9 NC_006273.1 + 125841 0.67 0.961658
Target:  5'- cUUGGUGGCGGCCUCcguGUCGUacggaucgacggCCA-GCa -3'
miRNA:   3'- cAGCUACUGCCGGAG---CAGUA------------GGUgCG- -5'
30159 3' -54.9 NC_006273.1 + 185686 0.67 0.959596
Target:  5'- cGUCGGacgUGGCguaaaaaaccgagguGGUCgcccaGUCGUCCACGCu -3'
miRNA:   3'- -CAGCU---ACUG---------------CCGGag---CAGUAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 188048 0.67 0.959596
Target:  5'- -gCGAUGACagcgccggcggcgcgGGUCUCGUCucGUCCAC-Ca -3'
miRNA:   3'- caGCUACUG---------------CCGGAGCAG--UAGGUGcG- -5'
30159 3' -54.9 NC_006273.1 + 115086 0.67 0.95818
Target:  5'- -cCGGUGAgGGacCCUCGUCGgaagcggCCGCGa -3'
miRNA:   3'- caGCUACUgCC--GGAGCAGUa------GGUGCg -5'
30159 3' -54.9 NC_006273.1 + 87835 0.67 0.95818
Target:  5'- -aCGAcccGCGaGCCugUCGUCAUCgGCGCg -3'
miRNA:   3'- caGCUac-UGC-CGG--AGCAGUAGgUGCG- -5'
30159 3' -54.9 NC_006273.1 + 48909 0.67 0.954491
Target:  5'- cUCGGUGAUGGCgUCGUa---CAgGCg -3'
miRNA:   3'- cAGCUACUGCCGgAGCAguagGUgCG- -5'
30159 3' -54.9 NC_006273.1 + 216155 0.67 0.954491
Target:  5'- -cCGggGGCGGCCgcuuUCGUCcUCguCGCu -3'
miRNA:   3'- caGCuaCUGCCGG----AGCAGuAGguGCG- -5'
30159 3' -54.9 NC_006273.1 + 38744 0.68 0.950588
Target:  5'- uUCGGccucgcaccUGACGGCCUacgaGUCGUaCUugGUg -3'
miRNA:   3'- cAGCU---------ACUGCCGGAg---CAGUA-GGugCG- -5'
30159 3' -54.9 NC_006273.1 + 179628 0.68 0.950588
Target:  5'- aUCGgcGAgGGCgUCG-CGUCUACGUc -3'
miRNA:   3'- cAGCuaCUgCCGgAGCaGUAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 26720 0.68 0.946468
Target:  5'- -aCGGUGAUGGUCag--CGUCCugGCu -3'
miRNA:   3'- caGCUACUGCCGGagcaGUAGGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.