miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30159 3' -54.9 NC_006273.1 + 2224 0.69 0.911388
Target:  5'- -gCGAUGGCGGguCCggcggCGUCGgggaccgugCCGCGCg -3'
miRNA:   3'- caGCUACUGCC--GGa----GCAGUa--------GGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 6635 0.72 0.809175
Target:  5'- uGUCGGgcGGCGGCCUCGUCucaCCGaugagacaccgacCGCa -3'
miRNA:   3'- -CAGCUa-CUGCCGGAGCAGua-GGU-------------GCG- -5'
30159 3' -54.9 NC_006273.1 + 7898 0.7 0.893007
Target:  5'- -aCGGUGGCGGCggacUGUCAgguaUCCGCGUg -3'
miRNA:   3'- caGCUACUGCCGga--GCAGU----AGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 10221 0.67 0.970878
Target:  5'- cUCGGUGcAUGGacgcCGUCugGUCCACGCa -3'
miRNA:   3'- cAGCUAC-UGCCgga-GCAG--UAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 18618 0.67 0.964931
Target:  5'- cGUCGu---CGGCCUCGUgGgcuauuaCCugGCa -3'
miRNA:   3'- -CAGCuacuGCCGGAGCAgUa------GGugCG- -5'
30159 3' -54.9 NC_006273.1 + 23785 0.69 0.899353
Target:  5'- cGUCGAUGGCaGGUCaUCGUCAcgcuguuugugaUCgGCGUu -3'
miRNA:   3'- -CAGCUACUG-CCGG-AGCAGU------------AGgUGCG- -5'
30159 3' -54.9 NC_006273.1 + 26720 0.68 0.946468
Target:  5'- -aCGGUGAUGGUCag--CGUCCugGCu -3'
miRNA:   3'- caGCUACUGCCGGagcaGUAGGugCG- -5'
30159 3' -54.9 NC_006273.1 + 28419 0.66 0.975333
Target:  5'- uUCGAUcGCaccgugguaauccaGGCCUauguccUGUCAUCCAUGCu -3'
miRNA:   3'- cAGCUAcUG--------------CCGGA------GCAGUAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 33069 0.69 0.905481
Target:  5'- cGUCGGguGCGcGCCugcUCGUCAUcgCCGCGCc -3'
miRNA:   3'- -CAGCUacUGC-CGG---AGCAGUA--GGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 35401 0.71 0.850557
Target:  5'- -aCGAaauUGuuGGCCUCGUCGgccucggCCACGUu -3'
miRNA:   3'- caGCU---ACugCCGGAGCAGUa------GGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 36454 0.68 0.946468
Target:  5'- -gCGGUGAaagaaGGUCUUGUCcUCgGCGCc -3'
miRNA:   3'- caGCUACUg----CCGGAGCAGuAGgUGCG- -5'
30159 3' -54.9 NC_006273.1 + 36871 0.66 0.977015
Target:  5'- gGUCGcgGaccGCGGagucggggagaagcuCCUCGUCAUCCucCGUg -3'
miRNA:   3'- -CAGCuaC---UGCC---------------GGAGCAGUAGGu-GCG- -5'
30159 3' -54.9 NC_006273.1 + 38482 0.68 0.942128
Target:  5'- -cCGccGGCGGCCUCcGUC-UCCGUGCc -3'
miRNA:   3'- caGCuaCUGCCGGAG-CAGuAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 38513 0.7 0.879673
Target:  5'- -cCGcUGGCGGCgaCGUCGUCCccguCGCc -3'
miRNA:   3'- caGCuACUGCCGgaGCAGUAGGu---GCG- -5'
30159 3' -54.9 NC_006273.1 + 38744 0.68 0.950588
Target:  5'- uUCGGccucgcaccUGACGGCCUacgaGUCGUaCUugGUg -3'
miRNA:   3'- cAGCU---------ACUGCCGGAg---CAGUA-GGugCG- -5'
30159 3' -54.9 NC_006273.1 + 39042 0.69 0.899353
Target:  5'- --gGAUGGcCGGCCUUGUCGcCCAcCGUc -3'
miRNA:   3'- cagCUACU-GCCGGAGCAGUaGGU-GCG- -5'
30159 3' -54.9 NC_006273.1 + 39701 0.74 0.699219
Target:  5'- -aCGcgGACGGCUcCGUCGUCCGUGUg -3'
miRNA:   3'- caGCuaCUGCCGGaGCAGUAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 41738 0.68 0.946468
Target:  5'- cUCcGUGAgCGGCCUCa-CGUCCcACGCg -3'
miRNA:   3'- cAGcUACU-GCCGGAGcaGUAGG-UGCG- -5'
30159 3' -54.9 NC_006273.1 + 43629 0.68 0.939417
Target:  5'- cGUCGAUGAUGGUUUUuaaaccgggacgacgGUgGUUCACGUg -3'
miRNA:   3'- -CAGCUACUGCCGGAG---------------CAgUAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 48909 0.67 0.954491
Target:  5'- cUCGGUGAUGGCgUCGUa---CAgGCg -3'
miRNA:   3'- cAGCUACUGCCGgAGCAguagGUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.