miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30159 3' -54.9 NC_006273.1 + 233375 0.68 0.942128
Target:  5'- -cCGccGGCGGCCUCcGUC-UCCGUGCc -3'
miRNA:   3'- caGCuaCUGCCGGAG-CAGuAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 77894 0.69 0.899353
Target:  5'- -aCGAgGA-GGCCaCGUCGUCCuACGCa -3'
miRNA:   3'- caGCUaCUgCCGGaGCAGUAGG-UGCG- -5'
30159 3' -54.9 NC_006273.1 + 33069 0.69 0.905481
Target:  5'- cGUCGGguGCGcGCCugcUCGUCAUcgCCGCGCc -3'
miRNA:   3'- -CAGCUacUGC-CGG---AGCAGUA--GGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 197117 0.69 0.911388
Target:  5'- -gCGAUGGCGGguCCggcggCGUCGgggaccgugCCGCGCg -3'
miRNA:   3'- caGCUACUGCC--GGa----GCAGUa--------GGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 193000 0.69 0.911388
Target:  5'- uUUGggGAUGGCCUCGUgcucaCcgCCGCGg -3'
miRNA:   3'- cAGCuaCUGCCGGAGCA-----GuaGGUGCg -5'
30159 3' -54.9 NC_006273.1 + 160846 0.69 0.917073
Target:  5'- uGUCGGUGAUGGUCUCuUCcUCuCugGUc -3'
miRNA:   3'- -CAGCUACUGCCGGAGcAGuAG-GugCG- -5'
30159 3' -54.9 NC_006273.1 + 172505 0.69 0.917073
Target:  5'- cUCGgcGAUGGCCcguagGUCAUCCACa- -3'
miRNA:   3'- cAGCuaCUGCCGGag---CAGUAGGUGcg -5'
30159 3' -54.9 NC_006273.1 + 77966 0.69 0.927769
Target:  5'- -aCGGcuGCGGCCccuccuccUCGUCucaGUCCACGCc -3'
miRNA:   3'- caGCUacUGCCGG--------AGCAG---UAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 211426 0.68 0.93278
Target:  5'- --aGGUGAgcagguCGGCCUCGga--CCACGCg -3'
miRNA:   3'- cagCUACU------GCCGGAGCaguaGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 72282 0.69 0.899353
Target:  5'- gGUCGAUGACGcuGCCgaugaggCcgCCGCGCa -3'
miRNA:   3'- -CAGCUACUGC--CGGagca---GuaGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 233935 0.69 0.899353
Target:  5'- --gGAUGGcCGGCCUUGUCGcCCAcCGUc -3'
miRNA:   3'- cagCUACU-GCCGGAGCAGUaGGU-GCG- -5'
30159 3' -54.9 NC_006273.1 + 233406 0.7 0.879673
Target:  5'- -cCGcUGGCGGCgaCGUCGUCCccguCGCc -3'
miRNA:   3'- caGCuACUGCCGgaGCAGUAGGu---GCG- -5'
30159 3' -54.9 NC_006273.1 + 234593 0.74 0.699219
Target:  5'- -aCGcgGACGGCUcCGUCGUCCGUGUg -3'
miRNA:   3'- caGCuaCUGCCGGaGCAGUAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 165204 0.74 0.699219
Target:  5'- gGUCGuagccGCGGCaCagGUCGUCCACGCa -3'
miRNA:   3'- -CAGCuac--UGCCG-GagCAGUAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 65517 0.73 0.756481
Target:  5'- -gCGAUagcGGCGGCCUCuucuUCGUCCGCGg -3'
miRNA:   3'- caGCUA---CUGCCGGAGc---AGUAGGUGCg -5'
30159 3' -54.9 NC_006273.1 + 105654 0.73 0.756481
Target:  5'- -aCGgcGGCGGCCUugcUGUCcUCCGCGUg -3'
miRNA:   3'- caGCuaCUGCCGGA---GCAGuAGGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 185858 0.72 0.801437
Target:  5'- -aCGGUaGAUGaCCUCGUCuugCCACGCg -3'
miRNA:   3'- caGCUA-CUGCcGGAGCAGua-GGUGCG- -5'
30159 3' -54.9 NC_006273.1 + 184251 0.72 0.813422
Target:  5'- aGUCGGUaGGCGucgauagcccucaccGCCUCGUCGUCCccuucccgGCGUg -3'
miRNA:   3'- -CAGCUA-CUGC---------------CGGAGCAGUAGG--------UGCG- -5'
30159 3' -54.9 NC_006273.1 + 89544 0.71 0.842798
Target:  5'- -aCGAaacccAgGGCCUCGUCGUCCACa- -3'
miRNA:   3'- caGCUac---UgCCGGAGCAGUAGGUGcg -5'
30159 3' -54.9 NC_006273.1 + 35401 0.71 0.850557
Target:  5'- -aCGAaauUGuuGGCCUCGUCGgccucggCCACGUu -3'
miRNA:   3'- caGCU---ACugCCGGAGCAGUa------GGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.