miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30159 5' -54.6 NC_006273.1 + 43965 0.65 0.980166
Target:  5'- aGCGCCCAGGcgaucucgcgcuCGACGACGgCUa--- -3'
miRNA:   3'- -UGCGGGUUCau----------GCUGCUGCgGAacua -5'
30159 5' -54.6 NC_006273.1 + 28950 0.66 0.978854
Target:  5'- uUGCCCGGGUuuccACGgucGCGACGUCUUa-- -3'
miRNA:   3'- uGCGGGUUCA----UGC---UGCUGCGGAAcua -5'
30159 5' -54.6 NC_006273.1 + 130426 0.66 0.978854
Target:  5'- cGCGCCCGcGUcAUGAUGGCGCUUc--- -3'
miRNA:   3'- -UGCGGGUuCA-UGCUGCUGCGGAacua -5'
30159 5' -54.6 NC_006273.1 + 201980 0.66 0.978854
Target:  5'- gACGCCCGaggcGGUGCG-CGuccaGCGCCUa--- -3'
miRNA:   3'- -UGCGGGU----UCAUGCuGC----UGCGGAacua -5'
30159 5' -54.6 NC_006273.1 + 188575 0.66 0.978854
Target:  5'- gGCGCCCAGGUgcACGcUGAUGuCCUcGGg -3'
miRNA:   3'- -UGCGGGUUCA--UGCuGCUGC-GGAaCUa -5'
30159 5' -54.6 NC_006273.1 + 100079 0.66 0.976526
Target:  5'- gGCGCCCGAGgcguCGcacAUGACGUCU-GAg -3'
miRNA:   3'- -UGCGGGUUCau--GC---UGCUGCGGAaCUa -5'
30159 5' -54.6 NC_006273.1 + 136074 0.66 0.974015
Target:  5'- gACGCaCCGGccucCGACGACGCCgagGAc -3'
miRNA:   3'- -UGCG-GGUUcau-GCUGCUGCGGaa-CUa -5'
30159 5' -54.6 NC_006273.1 + 2549 0.66 0.974015
Target:  5'- uACGUCCGGGccGCGGCGAgGCUgaGGUg -3'
miRNA:   3'- -UGCGGGUUCa-UGCUGCUgCGGaaCUA- -5'
30159 5' -54.6 NC_006273.1 + 118513 0.66 0.974015
Target:  5'- cACGgCCAAcGUACcGCGACGCCg---- -3'
miRNA:   3'- -UGCgGGUU-CAUGcUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 133230 0.66 0.971315
Target:  5'- uCGCCUAucaccuguacGGUgGCGACGGCGCCa---- -3'
miRNA:   3'- uGCGGGU----------UCA-UGCUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 52313 0.66 0.971315
Target:  5'- uUGCCCA---ACGcCGACGCCUgGAUc -3'
miRNA:   3'- uGCGGGUucaUGCuGCUGCGGAaCUA- -5'
30159 5' -54.6 NC_006273.1 + 135000 0.66 0.971315
Target:  5'- aGCGCCUGGcuacGCGACGACGUCUgcGAUc -3'
miRNA:   3'- -UGCGGGUUca--UGCUGCUGCGGAa-CUA- -5'
30159 5' -54.6 NC_006273.1 + 145826 0.66 0.971315
Target:  5'- gGCGCUCAacaAGUuuguggACGACGAgGCCcUGGg -3'
miRNA:   3'- -UGCGGGU---UCA------UGCUGCUgCGGaACUa -5'
30159 5' -54.6 NC_006273.1 + 97616 0.66 0.968718
Target:  5'- gACGCCgAuGUACGuggcccacgccauaGugGCCUUGAUa -3'
miRNA:   3'- -UGCGGgUuCAUGCug------------CugCGGAACUA- -5'
30159 5' -54.6 NC_006273.1 + 140677 0.66 0.968419
Target:  5'- aACGCCgCAGGcgACGACGGCGgg-UGGUg -3'
miRNA:   3'- -UGCGG-GUUCa-UGCUGCUGCggaACUA- -5'
30159 5' -54.6 NC_006273.1 + 217570 0.66 0.968419
Target:  5'- gUGCCCcAGgcuuCGGCGGCgGCUUUGGUg -3'
miRNA:   3'- uGCGGGuUCau--GCUGCUG-CGGAACUA- -5'
30159 5' -54.6 NC_006273.1 + 200667 0.67 0.965321
Target:  5'- cACGCCCGAGgaucUGGCGGcCGCCggcGGUc -3'
miRNA:   3'- -UGCGGGUUCau--GCUGCU-GCGGaa-CUA- -5'
30159 5' -54.6 NC_006273.1 + 126378 0.67 0.965321
Target:  5'- uGCGaauCCCGGGUG-GAUGuGCGCCUUGGUc -3'
miRNA:   3'- -UGC---GGGUUCAUgCUGC-UGCGGAACUA- -5'
30159 5' -54.6 NC_006273.1 + 133636 0.67 0.965321
Target:  5'- cGCGCCCAugccgcCGGCGAcCGCCgucUGAg -3'
miRNA:   3'- -UGCGGGUucau--GCUGCU-GCGGa--ACUa -5'
30159 5' -54.6 NC_006273.1 + 46880 0.67 0.958498
Target:  5'- cUGCaCCGGGUACG-CGACGCgCUggGGUg -3'
miRNA:   3'- uGCG-GGUUCAUGCuGCUGCG-GAa-CUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.