miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30159 5' -54.6 NC_006273.1 + 153115 1.05 0.010766
Target:  5'- cACGCCCAAGUACGACGACGCCUUGAUc -3'
miRNA:   3'- -UGCGGGUUCAUGCUGCUGCGGAACUA- -5'
30159 5' -54.6 NC_006273.1 + 114365 0.8 0.348696
Target:  5'- cCGCCCAGGgcgACGACGACGUCUgGAc -3'
miRNA:   3'- uGCGGGUUCa--UGCUGCUGCGGAaCUa -5'
30159 5' -54.6 NC_006273.1 + 128887 0.78 0.458114
Target:  5'- aGCGUCUgcaccacaAAGUACGGCGGCGCCUUGc- -3'
miRNA:   3'- -UGCGGG--------UUCAUGCUGCUGCGGAACua -5'
30159 5' -54.6 NC_006273.1 + 206167 0.78 0.476536
Target:  5'- gACGCCaCGAGUgACGACGACGCugCUUGGg -3'
miRNA:   3'- -UGCGG-GUUCA-UGCUGCUGCG--GAACUa -5'
30159 5' -54.6 NC_006273.1 + 183339 0.77 0.514427
Target:  5'- gACGCCCAAGUGgGACGuguuCGCCUa--- -3'
miRNA:   3'- -UGCGGGUUCAUgCUGCu---GCGGAacua -5'
30159 5' -54.6 NC_006273.1 + 1704 0.76 0.533831
Target:  5'- uGCGCgCCGAGgagGCGACGGCGCUcgGAc -3'
miRNA:   3'- -UGCG-GGUUCa--UGCUGCUGCGGaaCUa -5'
30159 5' -54.6 NC_006273.1 + 4947 0.75 0.603443
Target:  5'- gGCGCugcucugaagCCAAGUGcCGACGGCGCUUUGGc -3'
miRNA:   3'- -UGCG----------GGUUCAU-GCUGCUGCGGAACUa -5'
30159 5' -54.6 NC_006273.1 + 117456 0.75 0.613523
Target:  5'- uCGUCCGAGgacgACGACGACGCCg---- -3'
miRNA:   3'- uGCGGGUUCa---UGCUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 196597 0.75 0.633717
Target:  5'- uGCGCgCCGAGagGCGACGGCGCUcgGAc -3'
miRNA:   3'- -UGCG-GGUUCa-UGCUGCUGCGGaaCUa -5'
30159 5' -54.6 NC_006273.1 + 38923 0.74 0.643815
Target:  5'- gACGCCCAAG-GCGGCGuACGCCg---- -3'
miRNA:   3'- -UGCGGGUUCaUGCUGC-UGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 43905 0.71 0.798458
Target:  5'- -gGUCCAAGgGCGGCGGCGCCg---- -3'
miRNA:   3'- ugCGGGUUCaUGCUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 113731 0.71 0.807246
Target:  5'- aGCGCCgGAGguggcgacgGCGGCGGCGCCg---- -3'
miRNA:   3'- -UGCGGgUUCa--------UGCUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 114438 0.71 0.840778
Target:  5'- gACGCCCcgcGUcaccgGCGGCGGCGCCaUGGc -3'
miRNA:   3'- -UGCGGGuu-CA-----UGCUGCUGCGGaACUa -5'
30159 5' -54.6 NC_006273.1 + 97745 0.7 0.848717
Target:  5'- gACGCCCGGGUGacgGACGACGgCaaGAc -3'
miRNA:   3'- -UGCGGGUUCAUg--CUGCUGCgGaaCUa -5'
30159 5' -54.6 NC_006273.1 + 127199 0.69 0.89213
Target:  5'- gGCGCCCAaacgcGGUACGucCGAaaCGCCgUGGUg -3'
miRNA:   3'- -UGCGGGU-----UCAUGCu-GCU--GCGGaACUA- -5'
30159 5' -54.6 NC_006273.1 + 102110 0.69 0.904872
Target:  5'- uGCGCCCGAG-ACGGCGGCauCCUcGGg -3'
miRNA:   3'- -UGCGGGUUCaUGCUGCUGc-GGAaCUa -5'
30159 5' -54.6 NC_006273.1 + 189027 0.68 0.92227
Target:  5'- -gGCCU--GUGCGACGACaGCCgcgUGGUg -3'
miRNA:   3'- ugCGGGuuCAUGCUGCUG-CGGa--ACUA- -5'
30159 5' -54.6 NC_006273.1 + 144935 0.68 0.924432
Target:  5'- -aGCUCAAGUugcaucucucgacgcACGugGcCGCCUUGGUc -3'
miRNA:   3'- ugCGGGUUCA---------------UGCugCuGCGGAACUA- -5'
30159 5' -54.6 NC_006273.1 + 155162 0.68 0.924432
Target:  5'- cGCGCCCAGGUA-GGCcguuacugucugcagGACGCCguauUGGUg -3'
miRNA:   3'- -UGCGGGUUCAUgCUG---------------CUGCGGa---ACUA- -5'
30159 5' -54.6 NC_006273.1 + 90233 0.68 0.937578
Target:  5'- uCGUCCuuGaGCGGCG-CGCCUUGAa -3'
miRNA:   3'- uGCGGGuuCaUGCUGCuGCGGAACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.