miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30159 5' -54.6 NC_006273.1 + 195926 0.67 0.954763
Target:  5'- uGCGCCU----ACGGCGACGCCg---- -3'
miRNA:   3'- -UGCGGGuucaUGCUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 1033 0.67 0.954763
Target:  5'- uGCGCCU----ACGGCGACGCCg---- -3'
miRNA:   3'- -UGCGGGuucaUGCUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 135298 0.67 0.954377
Target:  5'- gACGCUCAGacgucauGUGCGACGccucggGCGCCUgUGAc -3'
miRNA:   3'- -UGCGGGUU-------CAUGCUGC------UGCGGA-ACUa -5'
30159 5' -54.6 NC_006273.1 + 79747 0.67 0.953599
Target:  5'- gGCGCCCuGGUACGAaacCGccgcaguaccaccgGCGCCgUGAUu -3'
miRNA:   3'- -UGCGGGuUCAUGCU---GC--------------UGCGGaACUA- -5'
30159 5' -54.6 NC_006273.1 + 192067 0.67 0.950806
Target:  5'- -aGUCCGGG-GCGACGACGCUUccgGGUu -3'
miRNA:   3'- ugCGGGUUCaUGCUGCUGCGGAa--CUA- -5'
30159 5' -54.6 NC_006273.1 + 193980 0.67 0.950806
Target:  5'- uCGCCCuGGgcucCGACGGCGCCg---- -3'
miRNA:   3'- uGCGGGuUCau--GCUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 171277 0.67 0.950806
Target:  5'- aGCGCgCGuugcaccgcGGUaACGACGGCGCCaUUGGa -3'
miRNA:   3'- -UGCGgGU---------UCA-UGCUGCUGCGG-AACUa -5'
30159 5' -54.6 NC_006273.1 + 103734 0.67 0.948325
Target:  5'- aGCGCCCGAG-ACGcGCGGCacaauggccguagccGCUUUGAa -3'
miRNA:   3'- -UGCGGGUUCaUGC-UGCUG---------------CGGAACUa -5'
30159 5' -54.6 NC_006273.1 + 194354 0.67 0.946625
Target:  5'- gACGCCCGAGca-GuCGACGCCg---- -3'
miRNA:   3'- -UGCGGGUUCaugCuGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 35184 0.67 0.946625
Target:  5'- uGCGCUCGAGUccaACGGCGAgaagcaaaaaCGCCgUGGg -3'
miRNA:   3'- -UGCGGGUUCA---UGCUGCU----------GCGGaACUa -5'
30159 5' -54.6 NC_006273.1 + 28744 0.68 0.942216
Target:  5'- gGCGCCCAGGUACaguucaGACGgcACGUUgUGAUc -3'
miRNA:   3'- -UGCGGGUUCAUG------CUGC--UGCGGaACUA- -5'
30159 5' -54.6 NC_006273.1 + 33979 0.68 0.942216
Target:  5'- cGCGCCCAGGUGuCGAUuGCGCUc---- -3'
miRNA:   3'- -UGCGGGUUCAU-GCUGcUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 90233 0.68 0.937578
Target:  5'- uCGUCCuuGaGCGGCG-CGCCUUGAa -3'
miRNA:   3'- uGCGGGuuCaUGCUGCuGCGGAACUa -5'
30159 5' -54.6 NC_006273.1 + 156872 0.68 0.937578
Target:  5'- gGCGCCCGGuGUcCgGGCGGCGCCgcagGGUu -3'
miRNA:   3'- -UGCGGGUU-CAuG-CUGCUGCGGaa--CUA- -5'
30159 5' -54.6 NC_006273.1 + 155162 0.68 0.924432
Target:  5'- cGCGCCCAGGUA-GGCcguuacugucugcagGACGCCguauUGGUg -3'
miRNA:   3'- -UGCGGGUUCAUgCUG---------------CUGCGGa---ACUA- -5'
30159 5' -54.6 NC_006273.1 + 144935 0.68 0.924432
Target:  5'- -aGCUCAAGUugcaucucucgacgcACGugGcCGCCUUGGUc -3'
miRNA:   3'- ugCGGGUUCA---------------UGCugCuGCGGAACUA- -5'
30159 5' -54.6 NC_006273.1 + 189027 0.68 0.92227
Target:  5'- -gGCCU--GUGCGACGACaGCCgcgUGGUg -3'
miRNA:   3'- ugCGGGuuCAUGCUGCUG-CGGa--ACUA- -5'
30159 5' -54.6 NC_006273.1 + 102110 0.69 0.904872
Target:  5'- uGCGCCCGAG-ACGGCGGCauCCUcGGg -3'
miRNA:   3'- -UGCGGGUUCaUGCUGCUGc-GGAaCUa -5'
30159 5' -54.6 NC_006273.1 + 127199 0.69 0.89213
Target:  5'- gGCGCCCAaacgcGGUACGucCGAaaCGCCgUGGUg -3'
miRNA:   3'- -UGCGGGU-----UCAUGCu-GCU--GCGGaACUA- -5'
30159 5' -54.6 NC_006273.1 + 97745 0.7 0.848717
Target:  5'- gACGCCCGGGUGacgGACGACGgCaaGAc -3'
miRNA:   3'- -UGCGGGUUCAUg--CUGCUGCgGaaCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.