miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30159 5' -54.6 NC_006273.1 + 1033 0.67 0.954763
Target:  5'- uGCGCCU----ACGGCGACGCCg---- -3'
miRNA:   3'- -UGCGGGuucaUGCUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 1704 0.76 0.533831
Target:  5'- uGCGCgCCGAGgagGCGACGGCGCUcgGAc -3'
miRNA:   3'- -UGCG-GGUUCa--UGCUGCUGCGGaaCUa -5'
30159 5' -54.6 NC_006273.1 + 2549 0.66 0.974015
Target:  5'- uACGUCCGGGccGCGGCGAgGCUgaGGUg -3'
miRNA:   3'- -UGCGGGUUCa-UGCUGCUgCGGaaCUA- -5'
30159 5' -54.6 NC_006273.1 + 4947 0.75 0.603443
Target:  5'- gGCGCugcucugaagCCAAGUGcCGACGGCGCUUUGGc -3'
miRNA:   3'- -UGCG----------GGUUCAU-GCUGCUGCGGAACUa -5'
30159 5' -54.6 NC_006273.1 + 28744 0.68 0.942216
Target:  5'- gGCGCCCAGGUACaguucaGACGgcACGUUgUGAUc -3'
miRNA:   3'- -UGCGGGUUCAUG------CUGC--UGCGGaACUA- -5'
30159 5' -54.6 NC_006273.1 + 28950 0.66 0.978854
Target:  5'- uUGCCCGGGUuuccACGgucGCGACGUCUUa-- -3'
miRNA:   3'- uGCGGGUUCA----UGC---UGCUGCGGAAcua -5'
30159 5' -54.6 NC_006273.1 + 33979 0.68 0.942216
Target:  5'- cGCGCCCAGGUGuCGAUuGCGCUc---- -3'
miRNA:   3'- -UGCGGGUUCAU-GCUGcUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 35184 0.67 0.946625
Target:  5'- uGCGCUCGAGUccaACGGCGAgaagcaaaaaCGCCgUGGg -3'
miRNA:   3'- -UGCGGGUUCA---UGCUGCU----------GCGGaACUa -5'
30159 5' -54.6 NC_006273.1 + 38923 0.74 0.643815
Target:  5'- gACGCCCAAG-GCGGCGuACGCCg---- -3'
miRNA:   3'- -UGCGGGUUCaUGCUGC-UGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 43905 0.71 0.798458
Target:  5'- -gGUCCAAGgGCGGCGGCGCCg---- -3'
miRNA:   3'- ugCGGGUUCaUGCUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 43965 0.65 0.980166
Target:  5'- aGCGCCCAGGcgaucucgcgcuCGACGACGgCUa--- -3'
miRNA:   3'- -UGCGGGUUCau----------GCUGCUGCgGAacua -5'
30159 5' -54.6 NC_006273.1 + 46880 0.67 0.958498
Target:  5'- cUGCaCCGGGUACG-CGACGCgCUggGGUg -3'
miRNA:   3'- uGCG-GGUUCAUGCuGCUGCG-GAa-CUA- -5'
30159 5' -54.6 NC_006273.1 + 52313 0.66 0.971315
Target:  5'- uUGCCCA---ACGcCGACGCCUgGAUc -3'
miRNA:   3'- uGCGGGUucaUGCuGCUGCGGAaCUA- -5'
30159 5' -54.6 NC_006273.1 + 79747 0.67 0.953599
Target:  5'- gGCGCCCuGGUACGAaacCGccgcaguaccaccgGCGCCgUGAUu -3'
miRNA:   3'- -UGCGGGuUCAUGCU---GC--------------UGCGGaACUA- -5'
30159 5' -54.6 NC_006273.1 + 90233 0.68 0.937578
Target:  5'- uCGUCCuuGaGCGGCG-CGCCUUGAa -3'
miRNA:   3'- uGCGGGuuCaUGCUGCuGCGGAACUa -5'
30159 5' -54.6 NC_006273.1 + 97616 0.66 0.968718
Target:  5'- gACGCCgAuGUACGuggcccacgccauaGugGCCUUGAUa -3'
miRNA:   3'- -UGCGGgUuCAUGCug------------CugCGGAACUA- -5'
30159 5' -54.6 NC_006273.1 + 97745 0.7 0.848717
Target:  5'- gACGCCCGGGUGacgGACGACGgCaaGAc -3'
miRNA:   3'- -UGCGGGUUCAUg--CUGCUGCgGaaCUa -5'
30159 5' -54.6 NC_006273.1 + 100079 0.66 0.976526
Target:  5'- gGCGCCCGAGgcguCGcacAUGACGUCU-GAg -3'
miRNA:   3'- -UGCGGGUUCau--GC---UGCUGCGGAaCUa -5'
30159 5' -54.6 NC_006273.1 + 102110 0.69 0.904872
Target:  5'- uGCGCCCGAG-ACGGCGGCauCCUcGGg -3'
miRNA:   3'- -UGCGGGUUCaUGCUGCUGc-GGAaCUa -5'
30159 5' -54.6 NC_006273.1 + 103734 0.67 0.948325
Target:  5'- aGCGCCCGAG-ACGcGCGGCacaauggccguagccGCUUUGAa -3'
miRNA:   3'- -UGCGGGUUCaUGC-UGCUG---------------CGGAACUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.