miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30159 5' -54.6 NC_006273.1 + 136074 0.66 0.974015
Target:  5'- gACGCaCCGGccucCGACGACGCCgagGAc -3'
miRNA:   3'- -UGCG-GGUUcau-GCUGCUGCGGaa-CUa -5'
30159 5' -54.6 NC_006273.1 + 79747 0.67 0.953599
Target:  5'- gGCGCCCuGGUACGAaacCGccgcaguaccaccgGCGCCgUGAUu -3'
miRNA:   3'- -UGCGGGuUCAUGCU---GC--------------UGCGGaACUA- -5'
30159 5' -54.6 NC_006273.1 + 135298 0.67 0.954377
Target:  5'- gACGCUCAGacgucauGUGCGACGccucggGCGCCUgUGAc -3'
miRNA:   3'- -UGCGGGUU-------CAUGCUGC------UGCGGA-ACUa -5'
30159 5' -54.6 NC_006273.1 + 195926 0.67 0.954763
Target:  5'- uGCGCCU----ACGGCGACGCCg---- -3'
miRNA:   3'- -UGCGGGuucaUGCUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 46880 0.67 0.958498
Target:  5'- cUGCaCCGGGUACG-CGACGCgCUggGGUg -3'
miRNA:   3'- uGCG-GGUUCAUGCuGCUGCG-GAa-CUA- -5'
30159 5' -54.6 NC_006273.1 + 126378 0.67 0.965321
Target:  5'- uGCGaauCCCGGGUG-GAUGuGCGCCUUGGUc -3'
miRNA:   3'- -UGC---GGGUUCAUgCUGC-UGCGGAACUA- -5'
30159 5' -54.6 NC_006273.1 + 140677 0.66 0.968419
Target:  5'- aACGCCgCAGGcgACGACGGCGgg-UGGUg -3'
miRNA:   3'- -UGCGG-GUUCa-UGCUGCUGCggaACUA- -5'
30159 5' -54.6 NC_006273.1 + 217570 0.66 0.968419
Target:  5'- gUGCCCcAGgcuuCGGCGGCgGCUUUGGUg -3'
miRNA:   3'- uGCGGGuUCau--GCUGCUG-CGGAACUA- -5'
30159 5' -54.6 NC_006273.1 + 52313 0.66 0.971315
Target:  5'- uUGCCCA---ACGcCGACGCCUgGAUc -3'
miRNA:   3'- uGCGGGUucaUGCuGCUGCGGAaCUA- -5'
30159 5' -54.6 NC_006273.1 + 35184 0.67 0.946625
Target:  5'- uGCGCUCGAGUccaACGGCGAgaagcaaaaaCGCCgUGGg -3'
miRNA:   3'- -UGCGGGUUCA---UGCUGCU----------GCGGaACUa -5'
30159 5' -54.6 NC_006273.1 + 33979 0.68 0.942216
Target:  5'- cGCGCCCAGGUGuCGAUuGCGCUc---- -3'
miRNA:   3'- -UGCGGGUUCAU-GCUGcUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 28744 0.68 0.942216
Target:  5'- gGCGCCCAGGUACaguucaGACGgcACGUUgUGAUc -3'
miRNA:   3'- -UGCGGGUUCAUG------CUGC--UGCGGaACUA- -5'
30159 5' -54.6 NC_006273.1 + 128887 0.78 0.458114
Target:  5'- aGCGUCUgcaccacaAAGUACGGCGGCGCCUUGc- -3'
miRNA:   3'- -UGCGGG--------UUCAUGCUGCUGCGGAACua -5'
30159 5' -54.6 NC_006273.1 + 196597 0.75 0.633717
Target:  5'- uGCGCgCCGAGagGCGACGGCGCUcgGAc -3'
miRNA:   3'- -UGCG-GGUUCa-UGCUGCUGCGGaaCUa -5'
30159 5' -54.6 NC_006273.1 + 38923 0.74 0.643815
Target:  5'- gACGCCCAAG-GCGGCGuACGCCg---- -3'
miRNA:   3'- -UGCGGGUUCaUGCUGC-UGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 113731 0.71 0.807246
Target:  5'- aGCGCCgGAGguggcgacgGCGGCGGCGCCg---- -3'
miRNA:   3'- -UGCGGgUUCa--------UGCUGCUGCGGaacua -5'
30159 5' -54.6 NC_006273.1 + 97745 0.7 0.848717
Target:  5'- gACGCCCGGGUGacgGACGACGgCaaGAc -3'
miRNA:   3'- -UGCGGGUUCAUg--CUGCUGCgGaaCUa -5'
30159 5' -54.6 NC_006273.1 + 127199 0.69 0.89213
Target:  5'- gGCGCCCAaacgcGGUACGucCGAaaCGCCgUGGUg -3'
miRNA:   3'- -UGCGGGU-----UCAUGCu-GCU--GCGGaACUA- -5'
30159 5' -54.6 NC_006273.1 + 189027 0.68 0.92227
Target:  5'- -gGCCU--GUGCGACGACaGCCgcgUGGUg -3'
miRNA:   3'- ugCGGGuuCAUGCUGCUG-CGGa--ACUA- -5'
30159 5' -54.6 NC_006273.1 + 90233 0.68 0.937578
Target:  5'- uCGUCCuuGaGCGGCG-CGCCUUGAa -3'
miRNA:   3'- uGCGGGuuCaUGCUGCuGCGGAACUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.