miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30160 3' -52.7 NC_006273.1 + 39219 0.66 0.994951
Target:  5'- aGCGGCAGc-AGCGugCCCgc-GUCGCg -3'
miRNA:   3'- -UGCUGUCuaUUGUugGGGagaCGGCG- -5'
30160 3' -52.7 NC_006273.1 + 141134 0.66 0.994951
Target:  5'- aGCGuGCGGAccGCAGCacggccggaaCC-CUGCCGCg -3'
miRNA:   3'- -UGC-UGUCUauUGUUGg---------GGaGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 29141 0.66 0.994951
Target:  5'- -aGACGGAgccguuACCgCCUCUGCC-Cg -3'
miRNA:   3'- ugCUGUCUauugu-UGG-GGAGACGGcG- -5'
30160 3' -52.7 NC_006273.1 + 204529 0.66 0.994951
Target:  5'- uCGGCAGcgGACGGCUCaC-CUGgCGCc -3'
miRNA:   3'- uGCUGUCuaUUGUUGGG-GaGACgGCG- -5'
30160 3' -52.7 NC_006273.1 + 234112 0.66 0.994951
Target:  5'- aGCGGCAGc-AGCGugCCCgc-GUCGCg -3'
miRNA:   3'- -UGCUGUCuaUUGUugGGGagaCGGCG- -5'
30160 3' -52.7 NC_006273.1 + 195595 0.66 0.994951
Target:  5'- cACGGCcuuccAGAUGcACGGCCCCaagGCgGCg -3'
miRNA:   3'- -UGCUG-----UCUAU-UGUUGGGGagaCGgCG- -5'
30160 3' -52.7 NC_006273.1 + 4632 0.66 0.994877
Target:  5'- cCGGCGGGUAAgGuaccggaGCCCCcagacagGCCGCc -3'
miRNA:   3'- uGCUGUCUAUUgU-------UGGGGaga----CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 106637 0.66 0.994492
Target:  5'- gGCGACGGuaAUGGCGACgacgcuucauccucuCCCggaUGCUGCu -3'
miRNA:   3'- -UGCUGUC--UAUUGUUG---------------GGGag-ACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 221308 0.66 0.994168
Target:  5'- cUGAgCGGuucACAGCCCCg--GCCGCc -3'
miRNA:   3'- uGCU-GUCuauUGUUGGGGagaCGGCG- -5'
30160 3' -52.7 NC_006273.1 + 191827 0.66 0.994168
Target:  5'- gAUGGCGGAUAGCGGCUCCguuaUGUUa- -3'
miRNA:   3'- -UGCUGUCUAUUGUUGGGGag--ACGGcg -5'
30160 3' -52.7 NC_006273.1 + 90924 0.66 0.994168
Target:  5'- -aGGCGGGUAcaacgGCAcgcgcACCgCCUC-GCCGCc -3'
miRNA:   3'- ugCUGUCUAU-----UGU-----UGG-GGAGaCGGCG- -5'
30160 3' -52.7 NC_006273.1 + 114454 0.66 0.994168
Target:  5'- gGCGGCGGcgccAUGGCGAgCgCCUCcacuuccgcggGCCGCa -3'
miRNA:   3'- -UGCUGUC----UAUUGUUgG-GGAGa----------CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 32208 0.66 0.994084
Target:  5'- aGCGAacGGUAAUcACCCCgaacaaaUCUGCCGa -3'
miRNA:   3'- -UGCUguCUAUUGuUGGGG-------AGACGGCg -5'
30160 3' -52.7 NC_006273.1 + 205341 0.66 0.993915
Target:  5'- gACGACAGuuccgugGGCAgcagaauguacagcGCCUCgguagCUGUCGCg -3'
miRNA:   3'- -UGCUGUCua-----UUGU--------------UGGGGa----GACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 206525 0.66 0.993828
Target:  5'- cGCGACgaaggacgGGAUGcACAGCgucuggccagcuaCCUCUGCUGCc -3'
miRNA:   3'- -UGCUG--------UCUAU-UGUUGg------------GGAGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 162010 0.66 0.993289
Target:  5'- gGCGACGGggAACuucaggagcACCUCUUUGUaCGCg -3'
miRNA:   3'- -UGCUGUCuaUUGu--------UGGGGAGACG-GCG- -5'
30160 3' -52.7 NC_006273.1 + 190739 0.66 0.993289
Target:  5'- -aGGCAGAacGCcACCag-CUGCCGCc -3'
miRNA:   3'- ugCUGUCUauUGuUGGggaGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 65279 0.66 0.993289
Target:  5'- cACGGCAGcgAcaACGACCaCC---GCCGCa -3'
miRNA:   3'- -UGCUGUCuaU--UGUUGG-GGagaCGGCG- -5'
30160 3' -52.7 NC_006273.1 + 5825 0.66 0.992308
Target:  5'- -aGACGGuGUAACcGCCgCaUCUGUCGCc -3'
miRNA:   3'- ugCUGUC-UAUUGuUGGgG-AGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 126737 0.66 0.992308
Target:  5'- gACGugAGAUAaguccgGCAGgCCCUgacGCUGCg -3'
miRNA:   3'- -UGCugUCUAU------UGUUgGGGAga-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.