Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30160 | 3' | -52.7 | NC_006273.1 | + | 195792 | 0.66 | 0.990005 |
Target: 5'- aACGGCAuGUcgccGCGccccccGCCCCUCggucgcgGCCGCg -3' miRNA: 3'- -UGCUGUcUAu---UGU------UGGGGAGa------CGGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 106637 | 0.66 | 0.994492 |
Target: 5'- gGCGACGGuaAUGGCGACgacgcuucauccucuCCCggaUGCUGCu -3' miRNA: 3'- -UGCUGUC--UAUUGUUG---------------GGGag-ACGGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 234112 | 0.66 | 0.994951 |
Target: 5'- aGCGGCAGc-AGCGugCCCgc-GUCGCg -3' miRNA: 3'- -UGCUGUCuaUUGUugGGGagaCGGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 187746 | 0.66 | 0.989877 |
Target: 5'- aGCGGCAGAucguccaUggUGACCguCCUCUGuCCGg -3' miRNA: 3'- -UGCUGUCU-------AuuGUUGG--GGAGAC-GGCg -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 221308 | 0.66 | 0.994168 |
Target: 5'- cUGAgCGGuucACAGCCCCg--GCCGCc -3' miRNA: 3'- uGCU-GUCuauUGUUGGGGagaCGGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 90924 | 0.66 | 0.994168 |
Target: 5'- -aGGCGGGUAcaacgGCAcgcgcACCgCCUC-GCCGCc -3' miRNA: 3'- ugCUGUCUAU-----UGU-----UGG-GGAGaCGGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 900 | 0.66 | 0.990005 |
Target: 5'- aACGGCAuGUcgccGCGccccccGCCCCUCggucgcgGCCGCg -3' miRNA: 3'- -UGCUGUcUAu---UGU------UGGGGAGa------CGGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 62058 | 0.66 | 0.990005 |
Target: 5'- gGCGGCGGAcuugaucgccagUAACAACgCgUCgaccgagcGCCGCg -3' miRNA: 3'- -UGCUGUCU------------AUUGUUGgGgAGa-------CGGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 117566 | 0.66 | 0.990005 |
Target: 5'- cCGGCGccGUAGCGGCCCCUCcuuCUGCu -3' miRNA: 3'- uGCUGUc-UAUUGUUGGGGAGac-GGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 204529 | 0.66 | 0.994951 |
Target: 5'- uCGGCAGcgGACGGCUCaC-CUGgCGCc -3' miRNA: 3'- uGCUGUCuaUUGUUGGG-GaGACgGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 195595 | 0.66 | 0.994951 |
Target: 5'- cACGGCcuuccAGAUGcACGGCCCCaagGCgGCg -3' miRNA: 3'- -UGCUG-----UCUAU-UGUUGGGGagaCGgCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 205341 | 0.66 | 0.993915 |
Target: 5'- gACGACAGuuccgugGGCAgcagaauguacagcGCCUCgguagCUGUCGCg -3' miRNA: 3'- -UGCUGUCua-----UUGU--------------UGGGGa----GACGGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 162010 | 0.66 | 0.993289 |
Target: 5'- gGCGACGGggAACuucaggagcACCUCUUUGUaCGCg -3' miRNA: 3'- -UGCUGUCuaUUGu--------UGGGGAGACG-GCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 133978 | 0.66 | 0.992308 |
Target: 5'- cACG-CGGAUGAgCGugCUgCUCUGCaCGCu -3' miRNA: 3'- -UGCuGUCUAUU-GUugGG-GAGACG-GCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 126737 | 0.66 | 0.992308 |
Target: 5'- gACGugAGAUAaguccgGCAGgCCCUgacGCUGCg -3' miRNA: 3'- -UGCugUCUAU------UGUUgGGGAga-CGGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 32208 | 0.66 | 0.994084 |
Target: 5'- aGCGAacGGUAAUcACCCCgaacaaaUCUGCCGa -3' miRNA: 3'- -UGCUguCUAUUGuUGGGG-------AGACGGCg -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 73892 | 0.66 | 0.992308 |
Target: 5'- cGCGccACAGAgAugGACCa--CUGCCGCu -3' miRNA: 3'- -UGC--UGUCUaUugUUGGggaGACGGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 161666 | 0.66 | 0.991216 |
Target: 5'- uGCGACGGGgu-CGGCg-CUCUGCCGg -3' miRNA: 3'- -UGCUGUCUauuGUUGggGAGACGGCg -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 65279 | 0.66 | 0.993289 |
Target: 5'- cACGGCAGcgAcaACGACCaCC---GCCGCa -3' miRNA: 3'- -UGCUGUCuaU--UGUUGG-GGagaCGGCG- -5' |
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30160 | 3' | -52.7 | NC_006273.1 | + | 190739 | 0.66 | 0.993289 |
Target: 5'- -aGGCAGAacGCcACCag-CUGCCGCc -3' miRNA: 3'- ugCUGUCUauUGuUGGggaGACGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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