miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30160 3' -52.7 NC_006273.1 + 153268 1.13 0.00554
Target:  5'- aACGACAGAUAACAACCCCUCUGCCGCa -3'
miRNA:   3'- -UGCUGUCUAUUGUUGGGGAGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 73508 0.8 0.48456
Target:  5'- gACGGCGGAUGACGgugaugggucgacACCCCUC-GCCGa -3'
miRNA:   3'- -UGCUGUCUAUUGU-------------UGGGGAGaCGGCg -5'
30160 3' -52.7 NC_006273.1 + 188624 0.79 0.514249
Target:  5'- cGCGGCAGAgucgGAUGAgCCCUCUaagcaGCCGCg -3'
miRNA:   3'- -UGCUGUCUa---UUGUUgGGGAGA-----CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 201198 0.78 0.552596
Target:  5'- cGCGAUAGAguugaugUGACAGCCCgcuacaccuCUCUGUCGCg -3'
miRNA:   3'- -UGCUGUCU-------AUUGUUGGG---------GAGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 130988 0.78 0.583676
Target:  5'- cGCGGCGGGUGGC-GCCCgUCUucGCCGUg -3'
miRNA:   3'- -UGCUGUCUAUUGuUGGGgAGA--CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 216557 0.75 0.742437
Target:  5'- gUGACAGAcGGCAGCUCCUCcaaccgacacucGCCGCg -3'
miRNA:   3'- uGCUGUCUaUUGUUGGGGAGa-----------CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 123269 0.74 0.762504
Target:  5'- uACGGCuGGUGaguccacGCGGCCCCgagaUGCCGCc -3'
miRNA:   3'- -UGCUGuCUAU-------UGUUGGGGag--ACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 162259 0.74 0.782067
Target:  5'- aGCGGCGGGacucgcGACGGCCCUUCUGCgGa -3'
miRNA:   3'- -UGCUGUCUa-----UUGUUGGGGAGACGgCg -5'
30160 3' -52.7 NC_006273.1 + 197723 0.73 0.840182
Target:  5'- cACGACGGGcUcucgcgccgucaacAGCGugCCUUUUGCCGCg -3'
miRNA:   3'- -UGCUGUCU-A--------------UUGUugGGGAGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 161545 0.73 0.842605
Target:  5'- aACGGCGGGaaAGCGGuCCCCUCgGaCCGCa -3'
miRNA:   3'- -UGCUGUCUa-UUGUU-GGGGAGaC-GGCG- -5'
30160 3' -52.7 NC_006273.1 + 169813 0.73 0.842605
Target:  5'- aGCGGCccAGGgccGGCAggGCCCCUUcGCCGCa -3'
miRNA:   3'- -UGCUG--UCUa--UUGU--UGGGGAGaCGGCG- -5'
30160 3' -52.7 NC_006273.1 + 26429 0.73 0.850558
Target:  5'- uACGAguGccgcGACGAUCCCUC-GCCGCu -3'
miRNA:   3'- -UGCUguCua--UUGUUGGGGAGaCGGCG- -5'
30160 3' -52.7 NC_006273.1 + 193994 0.72 0.858315
Target:  5'- gACGGCgccguugcccggGGAUAugAACCCCgccaaCUGgCCGCg -3'
miRNA:   3'- -UGCUG------------UCUAUugUUGGGGa----GAC-GGCG- -5'
30160 3' -52.7 NC_006273.1 + 118016 0.72 0.858315
Target:  5'- uGCGACAug-GAC-GCCgCCUCUGCCGg -3'
miRNA:   3'- -UGCUGUcuaUUGuUGG-GGAGACGGCg -5'
30160 3' -52.7 NC_006273.1 + 46163 0.72 0.865871
Target:  5'- uGCGACAcGcUAGCGACCgCC-CUGCgGCa -3'
miRNA:   3'- -UGCUGU-CuAUUGUUGG-GGaGACGgCG- -5'
30160 3' -52.7 NC_006273.1 + 180822 0.72 0.865871
Target:  5'- cACGACA--UGAC-ACUCUUUUGCCGCa -3'
miRNA:   3'- -UGCUGUcuAUUGuUGGGGAGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 153128 0.72 0.873218
Target:  5'- gACGACGccuuGAUccuCAACCUCUCgucgGCCGCc -3'
miRNA:   3'- -UGCUGU----CUAuu-GUUGGGGAGa---CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 122242 0.72 0.880351
Target:  5'- gGCGACuGA--GCGGCgcgCCCUCUGCgGCc -3'
miRNA:   3'- -UGCUGuCUauUGUUG---GGGAGACGgCG- -5'
30160 3' -52.7 NC_006273.1 + 212784 0.72 0.887267
Target:  5'- aACGACAGAccgaUGACGcGCCUUUCU-CCGCa -3'
miRNA:   3'- -UGCUGUCU----AUUGU-UGGGGAGAcGGCG- -5'
30160 3' -52.7 NC_006273.1 + 118129 0.71 0.891976
Target:  5'- cGCGGCAGAguucUAcguuacuuucggcgGCucuCCCCUCUGCgGCc -3'
miRNA:   3'- -UGCUGUCU----AU--------------UGuu-GGGGAGACGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.