miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30160 3' -52.7 NC_006273.1 + 126737 0.66 0.992308
Target:  5'- gACGugAGAUAaguccgGCAGgCCCUgacGCUGCg -3'
miRNA:   3'- -UGCugUCUAU------UGUUgGGGAga-CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 73892 0.66 0.992308
Target:  5'- cGCGccACAGAgAugGACCa--CUGCCGCu -3'
miRNA:   3'- -UGC--UGUCUaUugUUGGggaGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 161666 0.66 0.991216
Target:  5'- uGCGACGGGgu-CGGCg-CUCUGCCGg -3'
miRNA:   3'- -UGCUGUCUauuGUUGggGAGACGGCg -5'
30160 3' -52.7 NC_006273.1 + 56915 0.66 0.991216
Target:  5'- gACGACAGuggcggcAGCAGCCCgUUUGgCaGCg -3'
miRNA:   3'- -UGCUGUCua-----UUGUUGGGgAGACgG-CG- -5'
30160 3' -52.7 NC_006273.1 + 146328 0.66 0.991216
Target:  5'- aACG-CGGGUAGCGugUuuUUUcGCCGCg -3'
miRNA:   3'- -UGCuGUCUAUUGUugGggAGA-CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 90265 0.66 0.991216
Target:  5'- gGCGGCGGcgAAUcGCCCgggCUGCCccGCa -3'
miRNA:   3'- -UGCUGUCuaUUGuUGGGga-GACGG--CG- -5'
30160 3' -52.7 NC_006273.1 + 46752 0.66 0.991216
Target:  5'- cGCGGCugcuuAGAgGGCucauCCgaCUCUGCCGCg -3'
miRNA:   3'- -UGCUG-----UCUaUUGuu--GGg-GAGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 177664 0.66 0.990005
Target:  5'- -gGAUGGAUcGCAagacgcGCCUCUCggaGCCGCc -3'
miRNA:   3'- ugCUGUCUAuUGU------UGGGGAGa--CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 195792 0.66 0.990005
Target:  5'- aACGGCAuGUcgccGCGccccccGCCCCUCggucgcgGCCGCg -3'
miRNA:   3'- -UGCUGUcUAu---UGU------UGGGGAGa------CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 62058 0.66 0.990005
Target:  5'- gGCGGCGGAcuugaucgccagUAACAACgCgUCgaccgagcGCCGCg -3'
miRNA:   3'- -UGCUGUCU------------AUUGUUGgGgAGa-------CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 900 0.66 0.990005
Target:  5'- aACGGCAuGUcgccGCGccccccGCCCCUCggucgcgGCCGCg -3'
miRNA:   3'- -UGCUGUcUAu---UGU------UGGGGAGa------CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 117566 0.66 0.990005
Target:  5'- cCGGCGccGUAGCGGCCCCUCcuuCUGCu -3'
miRNA:   3'- uGCUGUc-UAUUGUUGGGGAGac-GGCG- -5'
30160 3' -52.7 NC_006273.1 + 187746 0.66 0.989877
Target:  5'- aGCGGCAGAucguccaUggUGACCguCCUCUGuCCGg -3'
miRNA:   3'- -UGCUGUCU-------AuuGUUGG--GGAGAC-GGCg -5'
30160 3' -52.7 NC_006273.1 + 201328 0.67 0.988667
Target:  5'- gGCGGCGGcgAcCAcuCCUCUUUGUCGCc -3'
miRNA:   3'- -UGCUGUCuaUuGUu-GGGGAGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 152004 0.67 0.988667
Target:  5'- gGCGGCGGc-AGCAGCCCgaCgugGcCCGCg -3'
miRNA:   3'- -UGCUGUCuaUUGUUGGGgaGa--C-GGCG- -5'
30160 3' -52.7 NC_006273.1 + 68039 0.67 0.987194
Target:  5'- cCGGCAGGUGugGgcucggccagcGCCgCCguggccgccgCUGCCGCc -3'
miRNA:   3'- uGCUGUCUAUugU-----------UGG-GGa---------GACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 142185 0.67 0.987194
Target:  5'- cCGGCGGc-AGCGACCCCUCggacagcgugaGCgGCg -3'
miRNA:   3'- uGCUGUCuaUUGUUGGGGAGa----------CGgCG- -5'
30160 3' -52.7 NC_006273.1 + 28241 0.67 0.987194
Target:  5'- gUGGCGcGUGACAACCCCcuacCUG-CGCg -3'
miRNA:   3'- uGCUGUcUAUUGUUGGGGa---GACgGCG- -5'
30160 3' -52.7 NC_006273.1 + 42357 0.67 0.987194
Target:  5'- gACGAgCAGGUccGGCGACaCUCUCcGCgGCg -3'
miRNA:   3'- -UGCU-GUCUA--UUGUUG-GGGAGaCGgCG- -5'
30160 3' -52.7 NC_006273.1 + 170631 0.67 0.986882
Target:  5'- cCGGCGGGcagcuucuuuuGCAACUcgCCUCUaGCCGCg -3'
miRNA:   3'- uGCUGUCUau---------UGUUGG--GGAGA-CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.