miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30160 3' -52.7 NC_006273.1 + 900 0.66 0.990005
Target:  5'- aACGGCAuGUcgccGCGccccccGCCCCUCggucgcgGCCGCg -3'
miRNA:   3'- -UGCUGUcUAu---UGU------UGGGGAGa------CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 3445 0.67 0.981882
Target:  5'- gGCGACGGAgaggAGCGugUCC---GCCGCc -3'
miRNA:   3'- -UGCUGUCUa---UUGUugGGGagaCGGCG- -5'
30160 3' -52.7 NC_006273.1 + 4632 0.66 0.994877
Target:  5'- cCGGCGGGUAAgGuaccggaGCCCCcagacagGCCGCc -3'
miRNA:   3'- uGCUGUCUAUUgU-------UGGGGaga----CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 5825 0.66 0.992308
Target:  5'- -aGACGGuGUAACcGCCgCaUCUGUCGCc -3'
miRNA:   3'- ugCUGUC-UAUUGuUGGgG-AGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 18960 0.68 0.972424
Target:  5'- cACGACaAGGUAcccaacaacaGCAGCgCCUgggGCCGCa -3'
miRNA:   3'- -UGCUG-UCUAU----------UGUUGgGGAga-CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 21200 0.69 0.966231
Target:  5'- -aGACAGGUAugGgggguggccggcuGCCgCCgcuguggCUGCCGCu -3'
miRNA:   3'- ugCUGUCUAUugU-------------UGG-GGa------GACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 22109 0.67 0.981882
Target:  5'- gGCGGCGGAggaAACuGCCgcgggagaagCCUCUGCgGUa -3'
miRNA:   3'- -UGCUGUCUa--UUGuUGG----------GGAGACGgCG- -5'
30160 3' -52.7 NC_006273.1 + 22811 0.68 0.972424
Target:  5'- uUGAUcuGGGUAGCAAgUCCUCcaacucgaccUGCCGCu -3'
miRNA:   3'- uGCUG--UCUAUUGUUgGGGAG----------ACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 26429 0.73 0.850558
Target:  5'- uACGAguGccgcGACGAUCCCUC-GCCGCu -3'
miRNA:   3'- -UGCUguCua--UUGUUGGGGAGaCGGCG- -5'
30160 3' -52.7 NC_006273.1 + 28241 0.67 0.987194
Target:  5'- gUGGCGcGUGACAACCCCcuacCUG-CGCg -3'
miRNA:   3'- uGCUGUcUAUUGUUGGGGa---GACgGCG- -5'
30160 3' -52.7 NC_006273.1 + 29141 0.66 0.994951
Target:  5'- -aGACGGAgccguuACCgCCUCUGCC-Cg -3'
miRNA:   3'- ugCUGUCUauugu-UGG-GGAGACGGcG- -5'
30160 3' -52.7 NC_006273.1 + 32208 0.66 0.994084
Target:  5'- aGCGAacGGUAAUcACCCCgaacaaaUCUGCCGa -3'
miRNA:   3'- -UGCUguCUAUUGuUGGGG-------AGACGGCg -5'
30160 3' -52.7 NC_006273.1 + 34210 0.67 0.983809
Target:  5'- cGCGACAGA---CAuCCCC-CUGCaCGUc -3'
miRNA:   3'- -UGCUGUCUauuGUuGGGGaGACG-GCG- -5'
30160 3' -52.7 NC_006273.1 + 37093 0.7 0.939166
Target:  5'- aGCGACAcgc-ACGAgCCCUCgaagcGCCGCa -3'
miRNA:   3'- -UGCUGUcuauUGUUgGGGAGa----CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 39219 0.66 0.994951
Target:  5'- aGCGGCAGc-AGCGugCCCgc-GUCGCg -3'
miRNA:   3'- -UGCUGUCuaUUGUugGGGagaCGGCG- -5'
30160 3' -52.7 NC_006273.1 + 40484 0.67 0.981882
Target:  5'- uCGGCGuGGUcgaGGCGGCCCggCUGCUGCc -3'
miRNA:   3'- uGCUGU-CUA---UUGUUGGGgaGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 42357 0.67 0.987194
Target:  5'- gACGAgCAGGUccGGCGACaCUCUCcGCgGCg -3'
miRNA:   3'- -UGCU-GUCUA--UUGUUG-GGGAGaCGgCG- -5'
30160 3' -52.7 NC_006273.1 + 46163 0.72 0.865871
Target:  5'- uGCGACAcGcUAGCGACCgCC-CUGCgGCa -3'
miRNA:   3'- -UGCUGU-CuAUUGUUGG-GGaGACGgCG- -5'
30160 3' -52.7 NC_006273.1 + 46752 0.66 0.991216
Target:  5'- cGCGGCugcuuAGAgGGCucauCCgaCUCUGCCGCg -3'
miRNA:   3'- -UGCUG-----UCUaUUGuu--GGg-GAGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 47631 0.69 0.959836
Target:  5'- -gGACAGAgGACggUCaCCauggacgaUCUGCCGCu -3'
miRNA:   3'- ugCUGUCUaUUGuuGG-GG--------AGACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.