miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30160 3' -52.7 NC_006273.1 + 186013 0.69 0.963298
Target:  5'- uCGGCAGGgcACuACCgCCgCUGCCGUu -3'
miRNA:   3'- uGCUGUCUauUGuUGG-GGaGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 137715 0.71 0.918441
Target:  5'- cGCGACGGcgAugGAUCCucuguCUUUGCUGCa -3'
miRNA:   3'- -UGCUGUCuaUugUUGGG-----GAGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 185193 0.7 0.929276
Target:  5'- cACGGCAGAguucggAGCGACUCC-CgGCgGCa -3'
miRNA:   3'- -UGCUGUCUa-----UUGUUGGGGaGaCGgCG- -5'
30160 3' -52.7 NC_006273.1 + 37093 0.7 0.939166
Target:  5'- aGCGACAcgc-ACGAgCCCUCgaagcGCCGCa -3'
miRNA:   3'- -UGCUGUcuauUGUUgGGGAGa----CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 162784 0.7 0.943759
Target:  5'- gGCGGCGGc-AGCGGCCgCaugucgCUGCCGCu -3'
miRNA:   3'- -UGCUGUCuaUUGUUGGgGa-----GACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 102652 0.7 0.94812
Target:  5'- aACGGCGuGAUGaugcGCAGCCCCagUUUGCCcuuGCa -3'
miRNA:   3'- -UGCUGU-CUAU----UGUUGGGG--AGACGG---CG- -5'
30160 3' -52.7 NC_006273.1 + 156283 0.7 0.94812
Target:  5'- aGCGACgccgucgcuGGGUAuCAACCCCgcggCUGaCCGUc -3'
miRNA:   3'- -UGCUG---------UCUAUuGUUGGGGa---GAC-GGCG- -5'
30160 3' -52.7 NC_006273.1 + 60464 0.69 0.956155
Target:  5'- cCGAUAGuaucAGCGGCgaCCUCUGCCGa -3'
miRNA:   3'- uGCUGUCua--UUGUUGg-GGAGACGGCg -5'
30160 3' -52.7 NC_006273.1 + 142082 0.69 0.956155
Target:  5'- gGCGACGGuUAccACGGCUUgcgCUGCCGCg -3'
miRNA:   3'- -UGCUGUCuAU--UGUUGGGga-GACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 81031 0.71 0.918441
Target:  5'- uCGACGc---GCGACCCUgCUGCCGCc -3'
miRNA:   3'- uGCUGUcuauUGUUGGGGaGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 118129 0.71 0.891976
Target:  5'- cGCGGCAGAguucUAcguuacuuucggcgGCucuCCCCUCUGCgGCc -3'
miRNA:   3'- -UGCUGUCU----AU--------------UGuu-GGGGAGACGgCG- -5'
30160 3' -52.7 NC_006273.1 + 212784 0.72 0.887267
Target:  5'- aACGACAGAccgaUGACGcGCCUUUCU-CCGCa -3'
miRNA:   3'- -UGCUGUCU----AUUGU-UGGGGAGAcGGCG- -5'
30160 3' -52.7 NC_006273.1 + 73508 0.8 0.48456
Target:  5'- gACGGCGGAUGACGgugaugggucgacACCCCUC-GCCGa -3'
miRNA:   3'- -UGCUGUCUAUUGU-------------UGGGGAGaCGGCg -5'
30160 3' -52.7 NC_006273.1 + 201198 0.78 0.552596
Target:  5'- cGCGAUAGAguugaugUGACAGCCCgcuacaccuCUCUGUCGCg -3'
miRNA:   3'- -UGCUGUCU-------AUUGUUGGG---------GAGACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 216557 0.75 0.742437
Target:  5'- gUGACAGAcGGCAGCUCCUCcaaccgacacucGCCGCg -3'
miRNA:   3'- uGCUGUCUaUUGUUGGGGAGa-----------CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 123269 0.74 0.762504
Target:  5'- uACGGCuGGUGaguccacGCGGCCCCgagaUGCCGCc -3'
miRNA:   3'- -UGCUGuCUAU-------UGUUGGGGag--ACGGCG- -5'
30160 3' -52.7 NC_006273.1 + 162259 0.74 0.782067
Target:  5'- aGCGGCGGGacucgcGACGGCCCUUCUGCgGa -3'
miRNA:   3'- -UGCUGUCUa-----UUGUUGGGGAGACGgCg -5'
30160 3' -52.7 NC_006273.1 + 46163 0.72 0.865871
Target:  5'- uGCGACAcGcUAGCGACCgCC-CUGCgGCa -3'
miRNA:   3'- -UGCUGU-CuAUUGUUGG-GGaGACGgCG- -5'
30160 3' -52.7 NC_006273.1 + 153128 0.72 0.873218
Target:  5'- gACGACGccuuGAUccuCAACCUCUCgucgGCCGCc -3'
miRNA:   3'- -UGCUGU----CUAuu-GUUGGGGAGa---CGGCG- -5'
30160 3' -52.7 NC_006273.1 + 122242 0.72 0.880351
Target:  5'- gGCGACuGA--GCGGCgcgCCCUCUGCgGCc -3'
miRNA:   3'- -UGCUGuCUauUGUUG---GGGAGACGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.