miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30160 5' -56.5 NC_006273.1 + 49293 0.66 0.970785
Target:  5'- gCGCGGC-ACGGUacgGAUCaugaGCUCCa -3'
miRNA:   3'- gGCGCCGuUGCCG---CUGGcaagUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 72399 0.66 0.970785
Target:  5'- aCGaCGGCGacgucgacgACGGCGACgaaaccacCGCUCCg -3'
miRNA:   3'- gGC-GCCGU---------UGCCGCUGgcaa----GUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 74981 0.66 0.970785
Target:  5'- uCCGCGuccucaauCAGCGGCG-CCGaUCGCcaugaaUCCg -3'
miRNA:   3'- -GGCGCc-------GUUGCCGCuGGCaAGUG------AGG- -5'
30160 5' -56.5 NC_006273.1 + 786 0.66 0.970785
Target:  5'- gCCGUGGCAcACGGaCGACgGagCcgUCCg -3'
miRNA:   3'- -GGCGCCGU-UGCC-GCUGgCaaGugAGG- -5'
30160 5' -56.5 NC_006273.1 + 87698 0.66 0.970785
Target:  5'- -gGCGGUggugcAGCGGCGGCUGagcggUCA-UCCu -3'
miRNA:   3'- ggCGCCG-----UUGCCGCUGGCa----AGUgAGG- -5'
30160 5' -56.5 NC_006273.1 + 101487 0.66 0.970785
Target:  5'- uCCGUGuCGACGGCGAggUUGgacuUCGCUCg -3'
miRNA:   3'- -GGCGCcGUUGCCGCU--GGCa---AGUGAGg -5'
30160 5' -56.5 NC_006273.1 + 102376 0.66 0.970785
Target:  5'- gCGUGGCAcucugcaacaACGGCG-CUagaCGCUCCu -3'
miRNA:   3'- gGCGCCGU----------UGCCGCuGGcaaGUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 195678 0.66 0.970785
Target:  5'- gCCGUGGCAcACGGaCGACgGagCcgUCCg -3'
miRNA:   3'- -GGCGCCGU-UGCC-GCUGgCaaGugAGG- -5'
30160 5' -56.5 NC_006273.1 + 22203 0.66 0.970785
Target:  5'- -aGCGGCAGCaugGGCGAcaCCGccUCGguUUCCg -3'
miRNA:   3'- ggCGCCGUUG---CCGCU--GGCa-AGU--GAGG- -5'
30160 5' -56.5 NC_006273.1 + 163192 0.66 0.970785
Target:  5'- gCCGUGGUcuguCGGCaGugCGgaCACUgCCu -3'
miRNA:   3'- -GGCGCCGuu--GCCG-CugGCaaGUGA-GG- -5'
30160 5' -56.5 NC_006273.1 + 82053 0.66 0.96968
Target:  5'- -aGCGGCAGCGGCGGCagaagaggagaCGgaggagugaacggUCGCcguugCCg -3'
miRNA:   3'- ggCGCCGUUGCCGCUG-----------GCa------------AGUGa----GG- -5'
30160 5' -56.5 NC_006273.1 + 51625 0.66 0.967967
Target:  5'- gCGaCGGCAGgcuCGGCGGCgCGgacagCAC-CCg -3'
miRNA:   3'- gGC-GCCGUU---GCCGCUG-GCaa---GUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 35170 0.66 0.967967
Target:  5'- uUCGCGGCAACGGUug-CGcUCGagUCCa -3'
miRNA:   3'- -GGCGCCGUUGCCGcugGCaAGUg-AGG- -5'
30160 5' -56.5 NC_006273.1 + 20507 0.66 0.967967
Target:  5'- gCGCcGCAGCGGCuuugugccgaGACCG-UCGCcaCCa -3'
miRNA:   3'- gGCGcCGUUGCCG----------CUGGCaAGUGa-GG- -5'
30160 5' -56.5 NC_006273.1 + 233686 0.66 0.967967
Target:  5'- gCCGCGGCGgauuuccgcGCGGgGgacgggguaGCCGagCGCUgCg -3'
miRNA:   3'- -GGCGCCGU---------UGCCgC---------UGGCaaGUGAgG- -5'
30160 5' -56.5 NC_006273.1 + 177363 0.66 0.967967
Target:  5'- aCGUGGaAAUGGCGGCCGUgaAC-CUg -3'
miRNA:   3'- gGCGCCgUUGCCGCUGGCAagUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 72392 0.66 0.967967
Target:  5'- aCCGCcGCAGCuGCcGCCGUcgagccUC-CUCCg -3'
miRNA:   3'- -GGCGcCGUUGcCGcUGGCA------AGuGAGG- -5'
30160 5' -56.5 NC_006273.1 + 66780 0.66 0.967967
Target:  5'- gCCGCGGCu-CGGCG-CUGa-CACUggCCu -3'
miRNA:   3'- -GGCGCCGuuGCCGCuGGCaaGUGA--GG- -5'
30160 5' -56.5 NC_006273.1 + 156032 0.66 0.967967
Target:  5'- gCGUGGuCAACGGCaugauGCCGUgucugcccaUCGCcgCCa -3'
miRNA:   3'- gGCGCC-GUUGCCGc----UGGCA---------AGUGa-GG- -5'
30160 5' -56.5 NC_006273.1 + 229453 0.66 0.967967
Target:  5'- cCUGUGGUGcgauuGCGGCGACUGgcgagagCAcCUCUa -3'
miRNA:   3'- -GGCGCCGU-----UGCCGCUGGCaa-----GU-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.