miRNA display CGI


Results 1 - 20 of 293 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30160 5' -56.5 NC_006273.1 + 116756 0.66 0.958367
Target:  5'- -aGCGGCAGCuagcCGGCCucUCGCUCUc -3'
miRNA:   3'- ggCGCCGUUGcc--GCUGGcaAGUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 123379 0.66 0.958367
Target:  5'- uCCGCGGUaucagcGACGGaaGCCGcguuCUCCg -3'
miRNA:   3'- -GGCGCCG------UUGCCgcUGGCaaguGAGG- -5'
30160 5' -56.5 NC_006273.1 + 189901 0.66 0.961763
Target:  5'- gCCGuCGGCugcGACGGUGGuuGUgaACUCa -3'
miRNA:   3'- -GGC-GCCG---UUGCCGCUggCAagUGAGg -5'
30160 5' -56.5 NC_006273.1 + 113616 0.66 0.964961
Target:  5'- gCCGUGGUAcGCGcGCGACCccgcggUCACgCUg -3'
miRNA:   3'- -GGCGCCGU-UGC-CGCUGGca----AGUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 615 0.66 0.958017
Target:  5'- uCUGCGGCuugcuguccACGGCGcuuucugcgcgcuGCCGgugcgugUgGCUCCa -3'
miRNA:   3'- -GGCGCCGu--------UGCCGC-------------UGGCa------AgUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 166419 0.66 0.954771
Target:  5'- aCCGUGGUGGgagUGGUGACgGUgUUACUCg -3'
miRNA:   3'- -GGCGCCGUU---GCCGCUGgCA-AGUGAGg -5'
30160 5' -56.5 NC_006273.1 + 101562 0.66 0.954771
Target:  5'- gCCGUGcGCGACgGGCGcGgCGUUCgcGCUCg -3'
miRNA:   3'- -GGCGC-CGUUG-CCGC-UgGCAAG--UGAGg -5'
30160 5' -56.5 NC_006273.1 + 34182 0.66 0.964961
Target:  5'- aCGUGGCGuggaaaaaaACGGCGGCgCGgugCG-UCCg -3'
miRNA:   3'- gGCGCCGU---------UGCCGCUG-GCaa-GUgAGG- -5'
30160 5' -56.5 NC_006273.1 + 72399 0.66 0.970785
Target:  5'- aCGaCGGCGacgucgacgACGGCGACgaaaccacCGCUCCg -3'
miRNA:   3'- gGC-GCCGU---------UGCCGCUGgcaa----GUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 55795 0.66 0.958367
Target:  5'- -aGCGGUg--GGCGGCCGaUgGCUUCg -3'
miRNA:   3'- ggCGCCGuugCCGCUGGCaAgUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 20226 0.66 0.958367
Target:  5'- gUGCGGCGACGGCacgaaaGACgGcgcuauaaCGCUCUg -3'
miRNA:   3'- gGCGCCGUUGCCG------CUGgCaa------GUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 39839 0.66 0.964961
Target:  5'- gUGUGGCGcgGCGGCGAgCCGcucaaagUCACgCUg -3'
miRNA:   3'- gGCGCCGU--UGCCGCU-GGCa------AGUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 54890 0.66 0.964961
Target:  5'- uUCGCGGCGACGGCGA------ACUaaCCa -3'
miRNA:   3'- -GGCGCCGUUGCCGCUggcaagUGA--GG- -5'
30160 5' -56.5 NC_006273.1 + 35170 0.66 0.967967
Target:  5'- uUCGCGGCAACGGUug-CGcUCGagUCCa -3'
miRNA:   3'- -GGCGCCGUUGCCGcugGCaAGUg-AGG- -5'
30160 5' -56.5 NC_006273.1 + 165048 0.66 0.958367
Target:  5'- gCGCGGCAGCGGUGcucaCGggCAgaCg -3'
miRNA:   3'- gGCGCCGUUGCCGCug--GCaaGUgaGg -5'
30160 5' -56.5 NC_006273.1 + 140129 0.66 0.963065
Target:  5'- aCCGCGGgggaaaagaaCGGCGGUGggucucgggccaaacGCCGUcguagacgacgCGCUCCg -3'
miRNA:   3'- -GGCGCC----------GUUGCCGC---------------UGGCAa----------GUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 63178 0.66 0.967675
Target:  5'- cUCGCGGC-GCGGCcGGCgCGgccUCGCcuuugccUCCg -3'
miRNA:   3'- -GGCGCCGuUGCCG-CUG-GCa--AGUG-------AGG- -5'
30160 5' -56.5 NC_006273.1 + 61585 0.66 0.964961
Target:  5'- gCGCGGCcguuUGGCcACCGcgCGCgcgUCCa -3'
miRNA:   3'- gGCGCCGuu--GCCGcUGGCaaGUG---AGG- -5'
30160 5' -56.5 NC_006273.1 + 117924 0.66 0.964961
Target:  5'- aCCGCGGCGGCGuCG-UCGUcgUC-CUCg -3'
miRNA:   3'- -GGCGCCGUUGCcGCuGGCA--AGuGAGg -5'
30160 5' -56.5 NC_006273.1 + 230630 0.66 0.958367
Target:  5'- aCCaGUGGUGGCGGgGAaUCGcUCAgUCCg -3'
miRNA:   3'- -GG-CGCCGUUGCCgCU-GGCaAGUgAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.