miRNA display CGI


Results 21 - 40 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30160 5' -56.5 NC_006273.1 + 72392 0.66 0.967967
Target:  5'- aCCGCcGCAGCuGCcGCCGUcgagccUC-CUCCg -3'
miRNA:   3'- -GGCGcCGUUGcCGcUGGCA------AGuGAGG- -5'
30160 5' -56.5 NC_006273.1 + 163349 0.66 0.967675
Target:  5'- uCUGCGGCAgucagcggguaguGCGGCaGCgCGUcuacgagcUCGuCUCCg -3'
miRNA:   3'- -GGCGCCGU-------------UGCCGcUG-GCA--------AGU-GAGG- -5'
30160 5' -56.5 NC_006273.1 + 63178 0.66 0.967675
Target:  5'- cUCGCGGC-GCGGCcGGCgCGgccUCGCcuuugccUCCg -3'
miRNA:   3'- -GGCGCCGuUGCCG-CUG-GCa--AGUG-------AGG- -5'
30160 5' -56.5 NC_006273.1 + 34182 0.66 0.964961
Target:  5'- aCGUGGCGuggaaaaaaACGGCGGCgCGgugCG-UCCg -3'
miRNA:   3'- gGCGCCGU---------UGCCGCUG-GCaa-GUgAGG- -5'
30160 5' -56.5 NC_006273.1 + 79096 0.66 0.964961
Target:  5'- gCCGCGGgGuugauaccCaGCGACgGcgUCGCUCCc -3'
miRNA:   3'- -GGCGCCgUu-------GcCGCUGgCa-AGUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 194828 0.66 0.964961
Target:  5'- -gGCGGCAagGCGGUgguaggucGACCGcccUCGgUCCc -3'
miRNA:   3'- ggCGCCGU--UGCCG--------CUGGCa--AGUgAGG- -5'
30160 5' -56.5 NC_006273.1 + 82603 0.66 0.964961
Target:  5'- -aGCGuGCAAacgGGCGuGCUGggcgCGCUCCg -3'
miRNA:   3'- ggCGC-CGUUg--CCGC-UGGCaa--GUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 61585 0.66 0.964961
Target:  5'- gCGCGGCcguuUGGCcACCGcgCGCgcgUCCa -3'
miRNA:   3'- gGCGCCGuu--GCCGcUGGCaaGUG---AGG- -5'
30160 5' -56.5 NC_006273.1 + 39839 0.66 0.964961
Target:  5'- gUGUGGCGcgGCGGCGAgCCGcucaaagUCACgCUg -3'
miRNA:   3'- gGCGCCGU--UGCCGCU-GGCa------AGUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 54890 0.66 0.964961
Target:  5'- uUCGCGGCGACGGCGA------ACUaaCCa -3'
miRNA:   3'- -GGCGCCGUUGCCGCUggcaagUGA--GG- -5'
30160 5' -56.5 NC_006273.1 + 113616 0.66 0.964961
Target:  5'- gCCGUGGUAcGCGcGCGACCccgcggUCACgCUg -3'
miRNA:   3'- -GGCGCCGU-UGC-CGCUGGca----AGUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 117924 0.66 0.964961
Target:  5'- aCCGCGGCGGCGuCG-UCGUcgUC-CUCg -3'
miRNA:   3'- -GGCGCCGUUGCcGCuGGCA--AGuGAGg -5'
30160 5' -56.5 NC_006273.1 + 140129 0.66 0.963065
Target:  5'- aCCGCGGgggaaaagaaCGGCGGUGggucucgggccaaacGCCGUcguagacgacgCGCUCCg -3'
miRNA:   3'- -GGCGCC----------GUUGCCGC---------------UGGCAa----------GUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 80400 0.66 0.961763
Target:  5'- nCgGCGGCAGCGGCgcaGAgCGa--ACUCa -3'
miRNA:   3'- -GgCGCCGUUGCCG---CUgGCaagUGAGg -5'
30160 5' -56.5 NC_006273.1 + 44646 0.66 0.961763
Target:  5'- uCgGCGGCAGCuGGUGG-CGUUCug-CCu -3'
miRNA:   3'- -GgCGCCGUUG-CCGCUgGCAAGugaGG- -5'
30160 5' -56.5 NC_006273.1 + 138035 0.66 0.961763
Target:  5'- -gGCGGCGcCGGCGcCUGgUUGCUgCCg -3'
miRNA:   3'- ggCGCCGUuGCCGCuGGCaAGUGA-GG- -5'
30160 5' -56.5 NC_006273.1 + 163000 0.66 0.961763
Target:  5'- aCgGCGGCAGCuGCGGCgGUaggaCACgcgggcgCCg -3'
miRNA:   3'- -GgCGCCGUUGcCGCUGgCAa---GUGa------GG- -5'
30160 5' -56.5 NC_006273.1 + 189901 0.66 0.961763
Target:  5'- gCCGuCGGCugcGACGGUGGuuGUgaACUCa -3'
miRNA:   3'- -GGC-GCCG---UUGCCGCUggCAagUGAGg -5'
30160 5' -56.5 NC_006273.1 + 116756 0.66 0.958367
Target:  5'- -aGCGGCAGCuagcCGGCCucUCGCUCUc -3'
miRNA:   3'- ggCGCCGUUGcc--GCUGGcaAGUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 20226 0.66 0.958367
Target:  5'- gUGCGGCGACGGCacgaaaGACgGcgcuauaaCGCUCUg -3'
miRNA:   3'- gGCGCCGUUGCCG------CUGgCaa------GUGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.