miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30160 5' -56.5 NC_006273.1 + 615 0.66 0.958017
Target:  5'- uCUGCGGCuugcuguccACGGCGcuuucugcgcgcuGCCGgugcgugUgGCUCCa -3'
miRNA:   3'- -GGCGCCGu--------UGCCGC-------------UGGCa------AgUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 786 0.66 0.970785
Target:  5'- gCCGUGGCAcACGGaCGACgGagCcgUCCg -3'
miRNA:   3'- -GGCGCCGU-UGCC-GCUGgCaaGugAGG- -5'
30160 5' -56.5 NC_006273.1 + 931 0.67 0.942741
Target:  5'- gUCGCGGCcGCGG-GGCCGgagggC-CUUCg -3'
miRNA:   3'- -GGCGCCGuUGCCgCUGGCaa---GuGAGG- -5'
30160 5' -56.5 NC_006273.1 + 941 0.7 0.844272
Target:  5'- -gGCGGCGACGGCGuuguuuucgggcguGCUGggCGCcggcgCCg -3'
miRNA:   3'- ggCGCCGUUGCCGC--------------UGGCaaGUGa----GG- -5'
30160 5' -56.5 NC_006273.1 + 1436 0.67 0.946961
Target:  5'- cCCGCGGCcgacccGACGGUgggcgacaaGGCCGgcCAUcCCg -3'
miRNA:   3'- -GGCGCCG------UUGCCG---------CUGGCaaGUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 1657 0.67 0.95097
Target:  5'- cCCGCGcGCGACGcugcuGCcucaGCCGg-CGCUCCg -3'
miRNA:   3'- -GGCGC-CGUUGC-----CGc---UGGCaaGUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 1718 0.78 0.44109
Target:  5'- gCCGCGGCggUGGCGACUGggCcgacagcgcaagcgACUUCg -3'
miRNA:   3'- -GGCGCCGuuGCCGCUGGCaaG--------------UGAGG- -5'
30160 5' -56.5 NC_006273.1 + 1817 0.7 0.814837
Target:  5'- gCGUGGCAGgagcUGGCGcaguacgaGCCGUUCGCgucggcgCCg -3'
miRNA:   3'- gGCGCCGUU----GCCGC--------UGGCAAGUGa------GG- -5'
30160 5' -56.5 NC_006273.1 + 1965 0.72 0.753859
Target:  5'- gCGCGGCGGggcCGGCGACgGggacgacgUCGCgCCa -3'
miRNA:   3'- gGCGCCGUU---GCCGCUGgCa-------AGUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 2235 0.75 0.600969
Target:  5'- uCCgGCGGCGuCGGgGACCGUgccgCGCgCCa -3'
miRNA:   3'- -GG-CGCCGUuGCCgCUGGCAa---GUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 2334 0.68 0.923726
Target:  5'- cCCGCuGGCGGCGGa-GCUGUcgCACUUUc -3'
miRNA:   3'- -GGCG-CCGUUGCCgcUGGCAa-GUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 6165 0.69 0.868533
Target:  5'- gCCGUGGguGCGuaGACUGcagUUACUCUc -3'
miRNA:   3'- -GGCGCCguUGCcgCUGGCa--AGUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 8020 0.68 0.923726
Target:  5'- aCgGUGGCGGCGGCaGACCcaaCAUgcgCCg -3'
miRNA:   3'- -GgCGCCGUUGCCG-CUGGcaaGUGa--GG- -5'
30160 5' -56.5 NC_006273.1 + 12514 0.74 0.620366
Target:  5'- aUCGCGGCGAauGCGugccuCUGcgCACUCCa -3'
miRNA:   3'- -GGCGCCGUUgcCGCu----GGCaaGUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 16649 0.67 0.928803
Target:  5'- gCCGCuGGUAccuGCugGGCG-CCGUggGCUCCu -3'
miRNA:   3'- -GGCG-CCGU---UG--CCGCuGGCAagUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 16995 0.7 0.814837
Target:  5'- gCGCGGCAguuucGCuggcucugucgaGGCGACCGUUucCGCgCCg -3'
miRNA:   3'- gGCGCCGU-----UG------------CCGCUGGCAA--GUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 17098 0.66 0.958367
Target:  5'- uCCGCGGCGACuucGCGgaacGCCGUcgacCGCguUCCc -3'
miRNA:   3'- -GGCGCCGUUGc--CGC----UGGCAa---GUG--AGG- -5'
30160 5' -56.5 NC_006273.1 + 19676 0.68 0.923207
Target:  5'- aUCuCGGCGAuaaccgcCGGCGuuGCCGccaugUCGCUCCg -3'
miRNA:   3'- -GGcGCCGUU-------GCCGC--UGGCa----AGUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 20226 0.66 0.958367
Target:  5'- gUGCGGCGACGGCacgaaaGACgGcgcuauaaCGCUCUg -3'
miRNA:   3'- gGCGCCGUUGCCG------CUGgCaa------GUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 20398 0.68 0.901277
Target:  5'- gCUGCcacaGCAGCGGCGucGCCccaGUUCGuCUCCu -3'
miRNA:   3'- -GGCGc---CGUUGCCGC--UGG---CAAGU-GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.