miRNA display CGI


Results 1 - 20 of 293 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30160 5' -56.5 NC_006273.1 + 193226 0.74 0.63008
Target:  5'- aCCGCuGGCGGCGGCGG-CGUUaauGCUgCCg -3'
miRNA:   3'- -GGCG-CCGUUGCCGCUgGCAAg--UGA-GG- -5'
30160 5' -56.5 NC_006273.1 + 56139 0.76 0.543461
Target:  5'- gCCGCGGaGGCGGCGACCGacgcggaggUCG-UCCg -3'
miRNA:   3'- -GGCGCCgUUGCCGCUGGCa--------AGUgAGG- -5'
30160 5' -56.5 NC_006273.1 + 34234 0.76 0.547247
Target:  5'- cCCGCGGCAcagggccgccggcagGCaGCGGCCGaugaguucgCGCUCCu -3'
miRNA:   3'- -GGCGCCGU---------------UGcCGCUGGCaa-------GUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 162394 0.75 0.552941
Target:  5'- -gGCGGCGGCGggaGCGGCgGUcagCACUCCu -3'
miRNA:   3'- ggCGCCGUUGC---CGCUGgCAa--GUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 123810 0.75 0.600969
Target:  5'- gUCGCGGgGGCGGUuugagacucGCCGUUCGCUUCc -3'
miRNA:   3'- -GGCGCCgUUGCCGc--------UGGCAAGUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 28037 0.75 0.600969
Target:  5'- gCUGCGGCGGC-GCGACC-UUCccuCUCCa -3'
miRNA:   3'- -GGCGCCGUUGcCGCUGGcAAGu--GAGG- -5'
30160 5' -56.5 NC_006273.1 + 197128 0.75 0.600969
Target:  5'- uCCgGCGGCGuCGGgGACCGUgccgCGCgCCa -3'
miRNA:   3'- -GG-CGCCGUuGCCgCUGGCAa---GUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 73742 0.74 0.63008
Target:  5'- -gGUGGCGGCGGCGGCCGag-GC-CCg -3'
miRNA:   3'- ggCGCCGUUGCCGCUGGCaagUGaGG- -5'
30160 5' -56.5 NC_006273.1 + 149438 0.74 0.63008
Target:  5'- uCUaCGGCAACGGCGgcGCCGgugguagucCGCUCCa -3'
miRNA:   3'- -GGcGCCGUUGCCGC--UGGCaa-------GUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 22140 0.76 0.543461
Target:  5'- uCUGCGGUAgcgGCGGCGGCCGU---CUCUg -3'
miRNA:   3'- -GGCGCCGU---UGCCGCUGGCAaguGAGG- -5'
30160 5' -56.5 NC_006273.1 + 51498 0.76 0.524667
Target:  5'- aCCgGCGGCAACGGCGGCgacgaGgacaacUCGCUCUc -3'
miRNA:   3'- -GG-CGCCGUUGCCGCUGg----Ca-----AGUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 161683 0.76 0.515363
Target:  5'- uCUGcCGGCuGCGGCGGCac-UCGCUCCa -3'
miRNA:   3'- -GGC-GCCGuUGCCGCUGgcaAGUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 98691 0.94 0.049046
Target:  5'- aCCGCGGCGGCGGCGACCGgccggucgUCGuCUCCu -3'
miRNA:   3'- -GGCGCCGUUGCCGCUGGCa-------AGU-GAGG- -5'
30160 5' -56.5 NC_006273.1 + 22313 0.8 0.319073
Target:  5'- aCGCGGCAGCGGCGccaacgaacGCCGcg-ACUCCg -3'
miRNA:   3'- gGCGCCGUUGCCGC---------UGGCaagUGAGG- -5'
30160 5' -56.5 NC_006273.1 + 187746 0.79 0.385789
Target:  5'- -aGCGGCAgaucguccAUGGUGACCGUccUCugUCCg -3'
miRNA:   3'- ggCGCCGU--------UGCCGCUGGCA--AGugAGG- -5'
30160 5' -56.5 NC_006273.1 + 87743 0.79 0.385789
Target:  5'- cUCGUGGCuGCGGCGGCCGUugUCGCg-- -3'
miRNA:   3'- -GGCGCCGuUGCCGCUGGCA--AGUGagg -5'
30160 5' -56.5 NC_006273.1 + 122190 0.78 0.435102
Target:  5'- uUCG-GGaCAACGGCGACCGcgCgACUCCa -3'
miRNA:   3'- -GGCgCC-GUUGCCGCUGGCaaG-UGAGG- -5'
30160 5' -56.5 NC_006273.1 + 162784 0.78 0.435102
Target:  5'- -gGCGGCGGCaGCGGCCGcaugUCGCUgCCg -3'
miRNA:   3'- ggCGCCGUUGcCGCUGGCa---AGUGA-GG- -5'
30160 5' -56.5 NC_006273.1 + 1718 0.78 0.44109
Target:  5'- gCCGCGGCggUGGCGACUGggCcgacagcgcaagcgACUUCg -3'
miRNA:   3'- -GGCGCCGuuGCCGCUGGCaaG--------------UGAGG- -5'
30160 5' -56.5 NC_006273.1 + 167323 0.77 0.452334
Target:  5'- gCgGCGGCAGCGGCGGCCacggcggCGCUggCCg -3'
miRNA:   3'- -GgCGCCGUUGCCGCUGGcaa----GUGA--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.