miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30161 3' -57.4 NC_006273.1 + 213705 0.66 0.947
Target:  5'- cCGAGUgGCGC-AGGucgugcacgucGGCCACCAgcgCCg -3'
miRNA:   3'- -GCUCGgCGUGcUCCu----------CUGGUGGUa--GG- -5'
30161 3' -57.4 NC_006273.1 + 197759 0.66 0.947
Target:  5'- --uGCCGCGCG-GGucgcguguugacGGACCcggagcCCAUCCa -3'
miRNA:   3'- gcuCGGCGUGCuCC------------UCUGGu-----GGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 131657 0.66 0.947
Target:  5'- uGuGCCGCGCGucucGGGcgcuGACCuggaaGCCAUUCu -3'
miRNA:   3'- gCuCGGCGUGC----UCCu---CUGG-----UGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 177832 0.66 0.947
Target:  5'- uCGGGCaGCGCGc-GAGAgCACgCGUCCc -3'
miRNA:   3'- -GCUCGgCGUGCucCUCUgGUG-GUAGG- -5'
30161 3' -57.4 NC_006273.1 + 38139 0.66 0.947
Target:  5'- uCGGGCCG-GCGAGGccGACgcgguuuauauaCACCGUCUc -3'
miRNA:   3'- -GCUCGGCgUGCUCCu-CUG------------GUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 112465 0.66 0.947
Target:  5'- aGGGaCCG-GCGuggcAGGAGcuuCCGCCGUCCc -3'
miRNA:   3'- gCUC-GGCgUGC----UCCUCu--GGUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 147909 0.66 0.944485
Target:  5'- cCGGGCCGCcUGAGGAaggggaggagugucaGACacaGCCGgucaucUCCg -3'
miRNA:   3'- -GCUCGGCGuGCUCCU---------------CUGg--UGGU------AGG- -5'
30161 3' -57.4 NC_006273.1 + 140888 0.66 0.942765
Target:  5'- cCGGGCCGCggACGGGaaccGGGACC-CCggugcggggGUCCc -3'
miRNA:   3'- -GCUCGGCG--UGCUC----CUCUGGuGG---------UAGG- -5'
30161 3' -57.4 NC_006273.1 + 167017 0.66 0.942765
Target:  5'- gCGuuGCCGCACGAGGcgcuGAUUugCAgCUg -3'
miRNA:   3'- -GCu-CGGCGUGCUCCu---CUGGugGUaGG- -5'
30161 3' -57.4 NC_006273.1 + 159853 0.66 0.942765
Target:  5'- -cGGCCGC-CGAGGuuucgAGGCCgGCCAguUCUg -3'
miRNA:   3'- gcUCGGCGuGCUCC-----UCUGG-UGGU--AGG- -5'
30161 3' -57.4 NC_006273.1 + 33783 0.66 0.942765
Target:  5'- aGGGCCaGCACGGcguuGGAGGCCAgguaCAUg- -3'
miRNA:   3'- gCUCGG-CGUGCU----CCUCUGGUg---GUAgg -5'
30161 3' -57.4 NC_006273.1 + 116787 0.66 0.942765
Target:  5'- cCGGcGCUGCgACGAcguGGAGGCCGCgaCGUCg -3'
miRNA:   3'- -GCU-CGGCG-UGCU---CCUCUGGUG--GUAGg -5'
30161 3' -57.4 NC_006273.1 + 190042 0.66 0.940121
Target:  5'- aCGGGCUgGUgggacuccuccgacgGCGGGGGGACgaaCACCGUCg -3'
miRNA:   3'- -GCUCGG-CG---------------UGCUCCUCUG---GUGGUAGg -5'
30161 3' -57.4 NC_006273.1 + 140937 0.66 0.940121
Target:  5'- cCGGGCCGUcggauggggggucgaGCGGGGggagggcagGGACCcCCggCCg -3'
miRNA:   3'- -GCUCGGCG---------------UGCUCC---------UCUGGuGGuaGG- -5'
30161 3' -57.4 NC_006273.1 + 79697 0.66 0.938315
Target:  5'- -uGGCCGUGCGcgaAGuGAGGCCGuaGUCCa -3'
miRNA:   3'- gcUCGGCGUGC---UC-CUCUGGUggUAGG- -5'
30161 3' -57.4 NC_006273.1 + 197269 0.66 0.938315
Target:  5'- cCGAGCgCGC-CGGGGAGAagaAUCucuUCCc -3'
miRNA:   3'- -GCUCG-GCGuGCUCCUCUgg-UGGu--AGG- -5'
30161 3' -57.4 NC_006273.1 + 189871 0.66 0.938315
Target:  5'- gGAGaCGCGuCGGGcGGACCGCCGggcaucgCCg -3'
miRNA:   3'- gCUCgGCGU-GCUCcUCUGGUGGUa------GG- -5'
30161 3' -57.4 NC_006273.1 + 147844 0.66 0.938315
Target:  5'- aGcGCCGCGgcaccaGAGacaGAGACCGCCG-CCg -3'
miRNA:   3'- gCuCGGCGUg-----CUC---CUCUGGUGGUaGG- -5'
30161 3' -57.4 NC_006273.1 + 18475 0.66 0.938315
Target:  5'- cCGGGUCGCAcCGAGGuGGa-GCCGUUg -3'
miRNA:   3'- -GCUCGGCGU-GCUCCuCUggUGGUAGg -5'
30161 3' -57.4 NC_006273.1 + 213136 0.66 0.938315
Target:  5'- gGAGCgGCACGAuGGuGACCGUCGg-- -3'
miRNA:   3'- gCUCGgCGUGCU-CCuCUGGUGGUagg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.