miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30161 3' -57.4 NC_006273.1 + 90371 0.66 0.93365
Target:  5'- gGAuGCCGCGcCGAcgacuGGAGAUaCACCAgCCu -3'
miRNA:   3'- gCU-CGGCGU-GCU-----CCUCUG-GUGGUaGG- -5'
30161 3' -57.4 NC_006273.1 + 109301 0.66 0.93365
Target:  5'- -cGGCaCG-ACGAGGuGGACCGCUggAUCCg -3'
miRNA:   3'- gcUCG-GCgUGCUCC-UCUGGUGG--UAGG- -5'
30161 3' -57.4 NC_006273.1 + 18263 0.66 0.93365
Target:  5'- aCGGGCUcUACGAGGuGGCCagugauaucaaaGCCuuuUCCa -3'
miRNA:   3'- -GCUCGGcGUGCUCCuCUGG------------UGGu--AGG- -5'
30161 3' -57.4 NC_006273.1 + 38139 0.66 0.947
Target:  5'- uCGGGCCG-GCGAGGccGACgcgguuuauauaCACCGUCUc -3'
miRNA:   3'- -GCUCGGCgUGCUCCu-CUG------------GUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 177832 0.66 0.947
Target:  5'- uCGGGCaGCGCGc-GAGAgCACgCGUCCc -3'
miRNA:   3'- -GCUCGgCGUGCucCUCUgGUG-GUAGG- -5'
30161 3' -57.4 NC_006273.1 + 167017 0.66 0.942765
Target:  5'- gCGuuGCCGCACGAGGcgcuGAUUugCAgCUg -3'
miRNA:   3'- -GCu-CGGCGUGCUCCu---CUGGugGUaGG- -5'
30161 3' -57.4 NC_006273.1 + 43831 0.66 0.923669
Target:  5'- uCGAGCUGCACaGuAGGcuuuGCCACCGUagCCc -3'
miRNA:   3'- -GCUCGGCGUG-C-UCCuc--UGGUGGUA--GG- -5'
30161 3' -57.4 NC_006273.1 + 184487 0.66 0.928268
Target:  5'- aGcAGUCGC-CGGGGAGccgguaacgcuguAUCACUGUCCa -3'
miRNA:   3'- gC-UCGGCGuGCUCCUC-------------UGGUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 189871 0.66 0.938315
Target:  5'- gGAGaCGCGuCGGGcGGACCGCCGggcaucgCCg -3'
miRNA:   3'- gCUCgGCGU-GCUCcUCUGGUGGUa------GG- -5'
30161 3' -57.4 NC_006273.1 + 213705 0.66 0.947
Target:  5'- cCGAGUgGCGC-AGGucgugcacgucGGCCACCAgcgCCg -3'
miRNA:   3'- -GCUCGgCGUGcUCCu----------CUGGUGGUa--GG- -5'
30161 3' -57.4 NC_006273.1 + 47405 0.66 0.93365
Target:  5'- gGAGgUGCugGcGGGGuaaCAUCAUCCg -3'
miRNA:   3'- gCUCgGCGugCuCCUCug-GUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 116787 0.66 0.942765
Target:  5'- cCGGcGCUGCgACGAcguGGAGGCCGCgaCGUCg -3'
miRNA:   3'- -GCU-CGGCG-UGCU---CCUCUGGUG--GUAGg -5'
30161 3' -57.4 NC_006273.1 + 33783 0.66 0.942765
Target:  5'- aGGGCCaGCACGGcguuGGAGGCCAgguaCAUg- -3'
miRNA:   3'- gCUCGG-CGUGCU----CCUCUGGUg---GUAgg -5'
30161 3' -57.4 NC_006273.1 + 104702 0.66 0.935542
Target:  5'- gCGAGCUGCaggcguuucuggACGAgaacuuuaagcagcuGGAGAUCACCccggCCg -3'
miRNA:   3'- -GCUCGGCG------------UGCU---------------CCUCUGGUGGua--GG- -5'
30161 3' -57.4 NC_006273.1 + 213136 0.66 0.938315
Target:  5'- gGAGCgGCACGAuGGuGACCGUCGg-- -3'
miRNA:   3'- gCUCGgCGUGCU-CCuCUGGUGGUagg -5'
30161 3' -57.4 NC_006273.1 + 45342 0.66 0.93365
Target:  5'- --cGCCGUcgGAGGAGucCCACCAgCCc -3'
miRNA:   3'- gcuCGGCGugCUCCUCu-GGUGGUaGG- -5'
30161 3' -57.4 NC_006273.1 + 22244 0.66 0.93365
Target:  5'- uGAGUCGC-CGAcGGucACCAUCGUgCCg -3'
miRNA:   3'- gCUCGGCGuGCU-CCucUGGUGGUA-GG- -5'
30161 3' -57.4 NC_006273.1 + 117527 0.66 0.923669
Target:  5'- aCGGuGCUGCuucuGCGAcugaccacGGuGACCACCGUCg -3'
miRNA:   3'- -GCU-CGGCG----UGCU--------CCuCUGGUGGUAGg -5'
30161 3' -57.4 NC_006273.1 + 112465 0.66 0.947
Target:  5'- aGGGaCCG-GCGuggcAGGAGcuuCCGCCGUCCc -3'
miRNA:   3'- gCUC-GGCgUGC----UCCUCu--GGUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 131657 0.66 0.947
Target:  5'- uGuGCCGCGCGucucGGGcgcuGACCuggaaGCCAUUCu -3'
miRNA:   3'- gCuCGGCGUGC----UCCu---CUGG-----UGGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.