miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30161 3' -57.4 NC_006273.1 + 153666 1.12 0.002402
Target:  5'- gCGAGCCGCACGAGGAGACCACCAUCCg -3'
miRNA:   3'- -GCUCGGCGUGCUCCUCUGGUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 175362 0.79 0.29672
Target:  5'- gGAGCCgGCGCG-GGAG-CUGCCGUCCg -3'
miRNA:   3'- gCUCGG-CGUGCuCCUCuGGUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 112161 0.78 0.360387
Target:  5'- uCGAGCCGCACGAGGAaaacGugCugCGcugCCc -3'
miRNA:   3'- -GCUCGGCGUGCUCCU----CugGugGUa--GG- -5'
30161 3' -57.4 NC_006273.1 + 196898 0.78 0.360387
Target:  5'- gCGAGCgGCACGGagacGGAGGCCGCCGg-- -3'
miRNA:   3'- -GCUCGgCGUGCU----CCUCUGGUGGUagg -5'
30161 3' -57.4 NC_006273.1 + 2005 0.78 0.360387
Target:  5'- gCGAGCgGCACGGagacGGAGGCCGCCGg-- -3'
miRNA:   3'- -GCUCGgCGUGCU----CCUCUGGUGGUagg -5'
30161 3' -57.4 NC_006273.1 + 109539 0.77 0.39159
Target:  5'- uCGAuCCGUACGAcacGGAGGCCGCCA-CCa -3'
miRNA:   3'- -GCUcGGCGUGCU---CCUCUGGUGGUaGG- -5'
30161 3' -57.4 NC_006273.1 + 180997 0.77 0.424501
Target:  5'- cCGAGUCGgacgACGAGGAGACCACgGUUUg -3'
miRNA:   3'- -GCUCGGCg---UGCUCCUCUGGUGgUAGG- -5'
30161 3' -57.4 NC_006273.1 + 44710 0.74 0.570255
Target:  5'- aCGAcGCCGCugGuGGAGgacgccgaACCGCCggCCg -3'
miRNA:   3'- -GCU-CGGCGugCuCCUC--------UGGUGGuaGG- -5'
30161 3' -57.4 NC_006273.1 + 59068 0.73 0.609014
Target:  5'- aGAGCCGC-CG-GGAGACagGCCGcCCa -3'
miRNA:   3'- gCUCGGCGuGCuCCUCUGg-UGGUaGG- -5'
30161 3' -57.4 NC_006273.1 + 47498 0.73 0.609014
Target:  5'- gCGAGCCGCGCGAGGcccagcucGAUCucgaaGCCgAUCCc -3'
miRNA:   3'- -GCUCGGCGUGCUCCu-------CUGG-----UGG-UAGG- -5'
30161 3' -57.4 NC_006273.1 + 2554 0.73 0.609014
Target:  5'- cCGGGCCGCgGCGAGGcugAGgugcucacccuaGCCACCAaacaUCCg -3'
miRNA:   3'- -GCUCGGCG-UGCUCC---UC------------UGGUGGU----AGG- -5'
30161 3' -57.4 NC_006273.1 + 167654 0.73 0.609014
Target:  5'- uGAGCgGCggcgcaacgGCGGGGucGGCCGCCGUUCg -3'
miRNA:   3'- gCUCGgCG---------UGCUCCu-CUGGUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 136044 0.73 0.617783
Target:  5'- gCGGGCCGCguuccgagcggagAUGAGGAcGACgCACCGgccUCCg -3'
miRNA:   3'- -GCUCGGCG-------------UGCUCCU-CUG-GUGGU---AGG- -5'
30161 3' -57.4 NC_006273.1 + 95509 0.73 0.628512
Target:  5'- aGGGUCccgGCAcgggcCGAGGAGACCacgACCGUCCc -3'
miRNA:   3'- gCUCGG---CGU-----GCUCCUCUGG---UGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 47800 0.72 0.638268
Target:  5'- gCGAGCUGUACGGGGAauacGAgCGCCgGUUCg -3'
miRNA:   3'- -GCUCGGCGUGCUCCU----CUgGUGG-UAGG- -5'
30161 3' -57.4 NC_006273.1 + 140415 0.72 0.65776
Target:  5'- gGAGCCGC-CGAGaGGGAgCCGCCGc-- -3'
miRNA:   3'- gCUCGGCGuGCUC-CUCU-GGUGGUagg -5'
30161 3' -57.4 NC_006273.1 + 154333 0.72 0.661652
Target:  5'- -cGGCUGCACGAGcagauccgccugagcGAGcGCCACCGUCUc -3'
miRNA:   3'- gcUCGGCGUGCUC---------------CUC-UGGUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 185302 0.72 0.677178
Target:  5'- uCGGGCCG-GCGugguGGuGACCACCGUgCg -3'
miRNA:   3'- -GCUCGGCgUGCu---CCuCUGGUGGUAgG- -5'
30161 3' -57.4 NC_006273.1 + 77877 0.72 0.677178
Target:  5'- -cAGCgGCaacaaccuauACGAGGAGGCCACguCGUCCu -3'
miRNA:   3'- gcUCGgCG----------UGCUCCUCUGGUG--GUAGG- -5'
30161 3' -57.4 NC_006273.1 + 121636 0.71 0.696461
Target:  5'- uGAGCUGCAUGAGcacGGcgccGCCGCCGUCg -3'
miRNA:   3'- gCUCGGCGUGCUCc--UC----UGGUGGUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.