Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30161 | 3' | -57.4 | NC_006273.1 | + | 140515 | 0.66 | 0.936939 |
Target: 5'- cCGAcuGCCGU-CGAgccGGGGcgucgcccguccccACCACCGUCCa -3' miRNA: 3'- -GCU--CGGCGuGCU---CCUC--------------UGGUGGUAGG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 104702 | 0.66 | 0.935542 |
Target: 5'- gCGAGCUGCaggcguuucuggACGAgaacuuuaagcagcuGGAGAUCACCccggCCg -3' miRNA: 3'- -GCUCGGCG------------UGCU---------------CCUCUGGUGGua--GG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 90371 | 0.66 | 0.93365 |
Target: 5'- gGAuGCCGCGcCGAcgacuGGAGAUaCACCAgCCu -3' miRNA: 3'- gCU-CGGCGU-GCU-----CCUCUG-GUGGUaGG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 47405 | 0.66 | 0.93365 |
Target: 5'- gGAGgUGCugGcGGGGuaaCAUCAUCCg -3' miRNA: 3'- gCUCgGCGugCuCCUCug-GUGGUAGG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 22244 | 0.66 | 0.93365 |
Target: 5'- uGAGUCGC-CGAcGGucACCAUCGUgCCg -3' miRNA: 3'- gCUCGGCGuGCU-CCucUGGUGGUA-GG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 45342 | 0.66 | 0.93365 |
Target: 5'- --cGCCGUcgGAGGAGucCCACCAgCCc -3' miRNA: 3'- gcuCGGCGugCUCCUCu-GGUGGUaGG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 109301 | 0.66 | 0.93365 |
Target: 5'- -cGGCaCG-ACGAGGuGGACCGCUggAUCCg -3' miRNA: 3'- gcUCG-GCgUGCUCC-UCUGGUGG--UAGG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 18263 | 0.66 | 0.93365 |
Target: 5'- aCGGGCUcUACGAGGuGGCCagugauaucaaaGCCuuuUCCa -3' miRNA: 3'- -GCUCGGcGUGCUCCuCUGG------------UGGu--AGG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 184487 | 0.66 | 0.928268 |
Target: 5'- aGcAGUCGC-CGGGGAGccgguaacgcuguAUCACUGUCCa -3' miRNA: 3'- gC-UCGGCGuGCUCCUC-------------UGGUGGUAGG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 43831 | 0.66 | 0.923669 |
Target: 5'- uCGAGCUGCACaGuAGGcuuuGCCACCGUagCCc -3' miRNA: 3'- -GCUCGGCGUG-C-UCCuc--UGGUGGUA--GG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 117527 | 0.66 | 0.923669 |
Target: 5'- aCGGuGCUGCuucuGCGAcugaccacGGuGACCACCGUCg -3' miRNA: 3'- -GCU-CGGCG----UGCU--------CCuCUGGUGGUAGg -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 125873 | 0.67 | 0.918352 |
Target: 5'- -cGGCCaGCAUGcAGGAGGCaCGCCcgCg -3' miRNA: 3'- gcUCGG-CGUGC-UCCUCUG-GUGGuaGg -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 21513 | 0.67 | 0.918352 |
Target: 5'- cCGAGCUauGCgaGCGGGGAcgggacgacGACCcACCGUCg -3' miRNA: 3'- -GCUCGG--CG--UGCUCCU---------CUGG-UGGUAGg -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 96284 | 0.67 | 0.918352 |
Target: 5'- --cGCCGU-CGAGGGcGACgcaaaaGCCAUCCg -3' miRNA: 3'- gcuCGGCGuGCUCCU-CUGg-----UGGUAGG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 86921 | 0.67 | 0.918352 |
Target: 5'- -cGGCUgGCGCGAGuAGGCCAUCAgcgCCc -3' miRNA: 3'- gcUCGG-CGUGCUCcUCUGGUGGUa--GG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 73834 | 0.67 | 0.917808 |
Target: 5'- aGAuGCgGUcCGAGGGGAcgcuuucCCGCCGUUCg -3' miRNA: 3'- gCU-CGgCGuGCUCCUCU-------GGUGGUAGG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 197639 | 0.67 | 0.912819 |
Target: 5'- -cAGCUgcaGCACGuGGAGACgCugCGUCg -3' miRNA: 3'- gcUCGG---CGUGCuCCUCUG-GugGUAGg -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 220161 | 0.67 | 0.912819 |
Target: 5'- aCGcGCCGCACGuagugguuGGGGuCguCCAUCUg -3' miRNA: 3'- -GCuCGGCGUGCu-------CCUCuGguGGUAGG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 56807 | 0.67 | 0.912819 |
Target: 5'- cCGGGCCGUcguCGuGcAGACCGCCGgcauuagCCa -3' miRNA: 3'- -GCUCGGCGu--GCuCcUCUGGUGGUa------GG- -5' |
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30161 | 3' | -57.4 | NC_006273.1 | + | 135656 | 0.67 | 0.912819 |
Target: 5'- aCGAGCCacggaucgaCACGGGGAcACCGUCGUCUa -3' miRNA: 3'- -GCUCGGc--------GUGCUCCUcUGGUGGUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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