miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30161 3' -57.4 NC_006273.1 + 1416 0.67 0.90707
Target:  5'- cCGuGgUGCACGAGGuGGACC-CCGcggCCg -3'
miRNA:   3'- -GCuCgGCGUGCUCC-UCUGGuGGUa--GG- -5'
30161 3' -57.4 NC_006273.1 + 1995 0.68 0.881965
Target:  5'- aGAGCCcaaGCuCGAGGccuauuGCCACgCAUCCg -3'
miRNA:   3'- gCUCGG---CGuGCUCCuc----UGGUG-GUAGG- -5'
30161 3' -57.4 NC_006273.1 + 2005 0.78 0.360387
Target:  5'- gCGAGCgGCACGGagacGGAGGCCGCCGg-- -3'
miRNA:   3'- -GCUCGgCGUGCU----CCUCUGGUGGUagg -5'
30161 3' -57.4 NC_006273.1 + 2554 0.73 0.609014
Target:  5'- cCGGGCCGCgGCGAGGcugAGgugcucacccuaGCCACCAaacaUCCg -3'
miRNA:   3'- -GCUCGGCG-UGCUCC---UC------------UGGUGGU----AGG- -5'
30161 3' -57.4 NC_006273.1 + 13597 0.69 0.805827
Target:  5'- cCGGGCCGC-CGugcuGGAgGGCCGCC--CCa -3'
miRNA:   3'- -GCUCGGCGuGCu---CCU-CUGGUGGuaGG- -5'
30161 3' -57.4 NC_006273.1 + 17394 0.68 0.881965
Target:  5'- gCGGuuGCCGCGCGuau-GGCCGCCggCCa -3'
miRNA:   3'- -GCU--CGGCGUGCuccuCUGGUGGuaGG- -5'
30161 3' -57.4 NC_006273.1 + 18263 0.66 0.93365
Target:  5'- aCGGGCUcUACGAGGuGGCCagugauaucaaaGCCuuuUCCa -3'
miRNA:   3'- -GCUCGGcGUGCUCCuCUGG------------UGGu--AGG- -5'
30161 3' -57.4 NC_006273.1 + 18475 0.66 0.938315
Target:  5'- cCGGGUCGCAcCGAGGuGGa-GCCGUUg -3'
miRNA:   3'- -GCUCGGCGU-GCUCCuCUggUGGUAGg -5'
30161 3' -57.4 NC_006273.1 + 21377 0.71 0.734376
Target:  5'- gCGA-CCGuCugGAGGuGGCCugCAUCUu -3'
miRNA:   3'- -GCUcGGC-GugCUCCuCUGGugGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 21513 0.67 0.918352
Target:  5'- cCGAGCUauGCgaGCGGGGAcgggacgacGACCcACCGUCg -3'
miRNA:   3'- -GCUCGG--CG--UGCUCCU---------CUGG-UGGUAGg -5'
30161 3' -57.4 NC_006273.1 + 22244 0.66 0.93365
Target:  5'- uGAGUCGC-CGAcGGucACCAUCGUgCCg -3'
miRNA:   3'- gCUCGGCGuGCU-CCucUGGUGGUA-GG- -5'
30161 3' -57.4 NC_006273.1 + 31779 0.68 0.856612
Target:  5'- gGGGCCgucuGCAcgccccggagugccuCGuGGAGACCACCGaagCCg -3'
miRNA:   3'- gCUCGG----CGU---------------GCuCCUCUGGUGGUa--GG- -5'
30161 3' -57.4 NC_006273.1 + 33783 0.66 0.942765
Target:  5'- aGGGCCaGCACGGcguuGGAGGCCAgguaCAUg- -3'
miRNA:   3'- gCUCGG-CGUGCU----CCUCUGGUg---GUAgg -5'
30161 3' -57.4 NC_006273.1 + 38139 0.66 0.947
Target:  5'- uCGGGCCG-GCGAGGccGACgcgguuuauauaCACCGUCUc -3'
miRNA:   3'- -GCUCGGCgUGCUCCu-CUG------------GUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 38192 0.7 0.761994
Target:  5'- cCGAGCC-CGCGccGcGGCCGCuCAUCCg -3'
miRNA:   3'- -GCUCGGcGUGCucCuCUGGUG-GUAGG- -5'
30161 3' -57.4 NC_006273.1 + 43831 0.66 0.923669
Target:  5'- uCGAGCUGCACaGuAGGcuuuGCCACCGUagCCc -3'
miRNA:   3'- -GCUCGGCGUG-C-UCCuc--UGGUGGUA--GG- -5'
30161 3' -57.4 NC_006273.1 + 44710 0.74 0.570255
Target:  5'- aCGAcGCCGCugGuGGAGgacgccgaACCGCCggCCg -3'
miRNA:   3'- -GCU-CGGCGugCuCCUC--------UGGUGGuaGG- -5'
30161 3' -57.4 NC_006273.1 + 45342 0.66 0.93365
Target:  5'- --cGCCGUcgGAGGAGucCCACCAgCCc -3'
miRNA:   3'- gcuCGGCGugCUCCUCu-GGUGGUaGG- -5'
30161 3' -57.4 NC_006273.1 + 45468 0.69 0.822412
Target:  5'- gCGAGCCG-ACGGuGAGuucacaACCACCGUCg -3'
miRNA:   3'- -GCUCGGCgUGCUcCUC------UGGUGGUAGg -5'
30161 3' -57.4 NC_006273.1 + 46028 0.67 0.901108
Target:  5'- uGAGCCGCugGAucuggaacuGGGGcucaugcgggugGCCACCcacCCg -3'
miRNA:   3'- gCUCGGCGugCU---------CCUC------------UGGUGGua-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.