miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30161 3' -57.4 NC_006273.1 + 139398 0.68 0.853643
Target:  5'- uGGGCCaGCcCGAguucGGGGugCAUCAUCUg -3'
miRNA:   3'- gCUCGG-CGuGCU----CCUCugGUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 203917 0.71 0.715548
Target:  5'- -aGGCCG-ACGAGGAGgcgcaGCCACCG-CCu -3'
miRNA:   3'- gcUCGGCgUGCUCCUC-----UGGUGGUaGG- -5'
30161 3' -57.4 NC_006273.1 + 21377 0.71 0.734376
Target:  5'- gCGA-CCGuCugGAGGuGGCCugCAUCUu -3'
miRNA:   3'- -GCUcGGC-GugCUCCuCUGGugGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 134867 0.71 0.734376
Target:  5'- uGAGCCGCcaggUGAGGcgGGAUCGCCGUgugCCa -3'
miRNA:   3'- gCUCGGCGu---GCUCC--UCUGGUGGUA---GG- -5'
30161 3' -57.4 NC_006273.1 + 38192 0.7 0.761994
Target:  5'- cCGAGCC-CGCGccGcGGCCGCuCAUCCg -3'
miRNA:   3'- -GCUCGGcGUGCucCuCUGGUG-GUAGG- -5'
30161 3' -57.4 NC_006273.1 + 56135 0.7 0.78867
Target:  5'- aCGGGCCGCG-GAGGcGGCgACCgacgcggaggucGUCCg -3'
miRNA:   3'- -GCUCGGCGUgCUCCuCUGgUGG------------UAGG- -5'
30161 3' -57.4 NC_006273.1 + 133264 0.69 0.830472
Target:  5'- -uGGCCGgAaagccCGAGGAuGCCGCCGUCUc -3'
miRNA:   3'- gcUCGGCgU-----GCUCCUcUGGUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 163159 0.69 0.830472
Target:  5'- cCGcAGUCGgAgGAGGAGAaugauuCCACCAcUCCa -3'
miRNA:   3'- -GC-UCGGCgUgCUCCUCU------GGUGGU-AGG- -5'
30161 3' -57.4 NC_006273.1 + 61578 0.68 0.846094
Target:  5'- cCGGGUCGCGCGGccguuuGGCCACCgcgcgcgcGUCCa -3'
miRNA:   3'- -GCUCGGCGUGCUccu---CUGGUGG--------UAGG- -5'
30161 3' -57.4 NC_006273.1 + 197412 0.71 0.715548
Target:  5'- gCGAGCCGCACGggcaguGGGAGuuCAUguUUCg -3'
miRNA:   3'- -GCUCGGCGUGC------UCCUCugGUGguAGG- -5'
30161 3' -57.4 NC_006273.1 + 185302 0.72 0.677178
Target:  5'- uCGGGCCG-GCGugguGGuGACCACCGUgCg -3'
miRNA:   3'- -GCUCGGCgUGCu---CCuCUGGUGGUAgG- -5'
30161 3' -57.4 NC_006273.1 + 77877 0.72 0.677178
Target:  5'- -cAGCgGCaacaaccuauACGAGGAGGCCACguCGUCCu -3'
miRNA:   3'- gcUCGgCG----------UGCUCCUCUGGUG--GUAGG- -5'
30161 3' -57.4 NC_006273.1 + 196898 0.78 0.360387
Target:  5'- gCGAGCgGCACGGagacGGAGGCCGCCGg-- -3'
miRNA:   3'- -GCUCGgCGUGCU----CCUCUGGUGGUagg -5'
30161 3' -57.4 NC_006273.1 + 112161 0.78 0.360387
Target:  5'- uCGAGCCGCACGAGGAaaacGugCugCGcugCCc -3'
miRNA:   3'- -GCUCGGCGUGCUCCU----CugGugGUa--GG- -5'
30161 3' -57.4 NC_006273.1 + 47498 0.73 0.609014
Target:  5'- gCGAGCCGCGCGAGGcccagcucGAUCucgaaGCCgAUCCc -3'
miRNA:   3'- -GCUCGGCGUGCUCCu-------CUGG-----UGG-UAGG- -5'
30161 3' -57.4 NC_006273.1 + 59068 0.73 0.609014
Target:  5'- aGAGCCGC-CG-GGAGACagGCCGcCCa -3'
miRNA:   3'- gCUCGGCGuGCuCCUCUGg-UGGUaGG- -5'
30161 3' -57.4 NC_006273.1 + 167654 0.73 0.609014
Target:  5'- uGAGCgGCggcgcaacgGCGGGGucGGCCGCCGUUCg -3'
miRNA:   3'- gCUCGgCG---------UGCUCCu-CUGGUGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 136044 0.73 0.617783
Target:  5'- gCGGGCCGCguuccgagcggagAUGAGGAcGACgCACCGgccUCCg -3'
miRNA:   3'- -GCUCGGCG-------------UGCUCCU-CUG-GUGGU---AGG- -5'
30161 3' -57.4 NC_006273.1 + 95509 0.73 0.628512
Target:  5'- aGGGUCccgGCAcgggcCGAGGAGACCacgACCGUCCc -3'
miRNA:   3'- gCUCGG---CGU-----GCUCCUCUGG---UGGUAGG- -5'
30161 3' -57.4 NC_006273.1 + 154333 0.72 0.661652
Target:  5'- -cGGCUGCACGAGcagauccgccugagcGAGcGCCACCGUCUc -3'
miRNA:   3'- gcUCGGCGUGCUC---------------CUC-UGGUGGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.