miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30161 5' -51 NC_006273.1 + 122991 0.66 0.998479
Target:  5'- -cGG-CGACGGUCcuucgucgaGCUCGCaCUGCUGg -3'
miRNA:   3'- guCUaGUUGCUAGa--------CGAGCG-GAUGAC- -5'
30161 5' -51 NC_006273.1 + 38949 0.66 0.998179
Target:  5'- aGGAUCAGCGugUUGUUCGCCa---- -3'
miRNA:   3'- gUCUAGUUGCuaGACGAGCGGaugac -5'
30161 5' -51 NC_006273.1 + 233842 0.66 0.998179
Target:  5'- aGGAUCAGCGugUUGUUCGCCa---- -3'
miRNA:   3'- gUCUAGUUGCuaGACGAGCGGaugac -5'
30161 5' -51 NC_006273.1 + 154372 0.66 0.99783
Target:  5'- ---cUCuuUGAUCUGCcCGUCUACUGc -3'
miRNA:   3'- gucuAGuuGCUAGACGaGCGGAUGAC- -5'
30161 5' -51 NC_006273.1 + 75363 0.66 0.99783
Target:  5'- gAGGUaGACGAaCUGCUCaaCUGCUGu -3'
miRNA:   3'- gUCUAgUUGCUaGACGAGcgGAUGAC- -5'
30161 5' -51 NC_006273.1 + 23364 0.66 0.997427
Target:  5'- --uGUCAGCGG-CUGCgcauUCGCCUGCc- -3'
miRNA:   3'- gucUAGUUGCUaGACG----AGCGGAUGac -5'
30161 5' -51 NC_006273.1 + 71649 0.66 0.997427
Target:  5'- gAGGagGACGucgCUGCUaaaccgccgcgCGCCUGCUGc -3'
miRNA:   3'- gUCUagUUGCua-GACGA-----------GCGGAUGAC- -5'
30161 5' -51 NC_006273.1 + 160664 0.66 0.996964
Target:  5'- aCAGuUCGAgcCGAUCUGCcgcgCGUCUACg- -3'
miRNA:   3'- -GUCuAGUU--GCUAGACGa---GCGGAUGac -5'
30161 5' -51 NC_006273.1 + 230502 0.66 0.996964
Target:  5'- --cAUCAACGuccuugGUCUGCUCGUCUggauugccGCUGu -3'
miRNA:   3'- gucUAGUUGC------UAGACGAGCGGA--------UGAC- -5'
30161 5' -51 NC_006273.1 + 81696 0.67 0.996433
Target:  5'- gCAGAUCGuUGAUCUGCagGC--GCUGg -3'
miRNA:   3'- -GUCUAGUuGCUAGACGagCGgaUGAC- -5'
30161 5' -51 NC_006273.1 + 68987 0.67 0.995143
Target:  5'- aAGAUCcGCGAUCUGCggacUCGUUUugcggaACUGg -3'
miRNA:   3'- gUCUAGuUGCUAGACG----AGCGGA------UGAC- -5'
30161 5' -51 NC_006273.1 + 196322 0.67 0.993498
Target:  5'- gCAGAaaAcCGAUCUGCacCGCCUGCg- -3'
miRNA:   3'- -GUCUagUuGCUAGACGa-GCGGAUGac -5'
30161 5' -51 NC_006273.1 + 17602 0.67 0.993498
Target:  5'- -cGAUaCAGCGGUaUGCUCGCCgccGCUu -3'
miRNA:   3'- guCUA-GUUGCUAgACGAGCGGa--UGAc -5'
30161 5' -51 NC_006273.1 + 12441 0.68 0.992521
Target:  5'- cCGGAUCAuauuAUCUGCgaccuUCGCCUGCa- -3'
miRNA:   3'- -GUCUAGUugc-UAGACG-----AGCGGAUGac -5'
30161 5' -51 NC_006273.1 + 110361 0.68 0.990721
Target:  5'- gUAGAUCAcacccgcggcuacguACGA-CUGCgcgGCCUGCUGc -3'
miRNA:   3'- -GUCUAGU---------------UGCUaGACGag-CGGAUGAC- -5'
30161 5' -51 NC_006273.1 + 59566 0.69 0.985773
Target:  5'- cCAGAUggaAACGAUagaUGCgcgagUGCCUACUGu -3'
miRNA:   3'- -GUCUAg--UUGCUAg--ACGa----GCGGAUGAC- -5'
30161 5' -51 NC_006273.1 + 67806 0.69 0.983989
Target:  5'- gCGGAUCAACGAgugUCUGCacgGCgUGCUa -3'
miRNA:   3'- -GUCUAGUUGCU---AGACGag-CGgAUGAc -5'
30161 5' -51 NC_006273.1 + 161672 0.69 0.983989
Target:  5'- gGGGUCGGCGcUCUGC-CGgCUGCg- -3'
miRNA:   3'- gUCUAGUUGCuAGACGaGCgGAUGac -5'
30161 5' -51 NC_006273.1 + 168668 0.7 0.975127
Target:  5'- gCAGGUCGugGAUCUGCgugaggcgacccUCGuUUUGCUGc -3'
miRNA:   3'- -GUCUAGUugCUAGACG------------AGC-GGAUGAC- -5'
30161 5' -51 NC_006273.1 + 201533 0.7 0.966447
Target:  5'- -uGGUCGACGAcuacuuUCUGCUCcCCgcggGCUGg -3'
miRNA:   3'- guCUAGUUGCU------AGACGAGcGGa---UGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.