miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30162 3' -63.5 NC_006273.1 + 147854 0.65 0.715126
Target:  5'- cGCGGUgaccgucUGCCGCCgGCuGAGGugCgugCUg -3'
miRNA:   3'- -CGCCG-------GCGGCGGaCG-CUCCugGa--GAg -5'
30162 3' -63.5 NC_006273.1 + 124058 0.66 0.706812
Target:  5'- cGCGGCCG-CGCUaUGCGGccaGGCCUCc- -3'
miRNA:   3'- -CGCCGGCgGCGG-ACGCUc--CUGGAGag -5'
30162 3' -63.5 NC_006273.1 + 196467 0.66 0.706812
Target:  5'- gGCGuaCGCCGCCUuggGCGucaccacguuGGACCagUCg -3'
miRNA:   3'- -CGCcgGCGGCGGA---CGCu---------CCUGGagAG- -5'
30162 3' -63.5 NC_006273.1 + 221805 0.66 0.706812
Target:  5'- gGCGGCCcggGCCGCCcgGCGGGuGAgCa--- -3'
miRNA:   3'- -CGCCGG---CGGCGGa-CGCUC-CUgGagag -5'
30162 3' -63.5 NC_006273.1 + 45038 0.66 0.706812
Target:  5'- aCGGCgGCgGCCUGCucgcacGGACCUa-- -3'
miRNA:   3'- cGCCGgCGgCGGACGcu----CCUGGAgag -5'
30162 3' -63.5 NC_006273.1 + 74187 0.66 0.706812
Target:  5'- --cGUgGUCGCCUGCGGGGAacacgaUCUCc -3'
miRNA:   3'- cgcCGgCGGCGGACGCUCCUgg----AGAG- -5'
30162 3' -63.5 NC_006273.1 + 147365 0.66 0.706812
Target:  5'- aCGGaCGCCGCCggggGgGAGGugcacgACCUgUCg -3'
miRNA:   3'- cGCCgGCGGCGGa---CgCUCC------UGGAgAG- -5'
30162 3' -63.5 NC_006273.1 + 98809 0.66 0.706812
Target:  5'- --uGCCGCCGCCguucGCGgAGGAgguuCCUgCUCc -3'
miRNA:   3'- cgcCGGCGGCGGa---CGC-UCCU----GGA-GAG- -5'
30162 3' -63.5 NC_006273.1 + 84856 0.66 0.697523
Target:  5'- cGCGGCgGCCGUCaggGUGgAGGGCUUg-- -3'
miRNA:   3'- -CGCCGgCGGCGGa--CGC-UCCUGGAgag -5'
30162 3' -63.5 NC_006273.1 + 156597 0.66 0.697523
Target:  5'- aGCaGCCGUgCGCCUGuCGc--GCCUCUCa -3'
miRNA:   3'- -CGcCGGCG-GCGGAC-GCuccUGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 21675 0.66 0.697523
Target:  5'- gGUGGCCGacgugcaCGaCCUGCGccacucGGACCgCUCc -3'
miRNA:   3'- -CGCCGGCg------GC-GGACGCu-----CCUGGaGAG- -5'
30162 3' -63.5 NC_006273.1 + 81732 0.66 0.696591
Target:  5'- gGCGGCCGCUugcccgaGcCCUGCGcGGAgCCgggCUg -3'
miRNA:   3'- -CGCCGGCGG-------C-GGACGCuCCU-GGa--GAg -5'
30162 3' -63.5 NC_006273.1 + 94150 0.66 0.691926
Target:  5'- cGCGGCgGuggaaaauuaccgcuCCGCCcaccuagGCG-GGGCCUCUg -3'
miRNA:   3'- -CGCCGgC---------------GGCGGa------CGCuCCUGGAGAg -5'
30162 3' -63.5 NC_006273.1 + 2556 0.66 0.688186
Target:  5'- -gGGCCGCgGCgagGCuGAGGugCUCa- -3'
miRNA:   3'- cgCCGGCGgCGga-CG-CUCCugGAGag -5'
30162 3' -63.5 NC_006273.1 + 37281 0.66 0.68725
Target:  5'- cGUGGCCGCCGagcagccCUUGCGAcGGCCg--- -3'
miRNA:   3'- -CGCCGGCGGC-------GGACGCUcCUGGagag -5'
30162 3' -63.5 NC_006273.1 + 5526 0.66 0.68725
Target:  5'- cGCGGuCCGgcucagcCCGCgUGCGAaGAucguCCUCUCg -3'
miRNA:   3'- -CGCC-GGC-------GGCGgACGCUcCU----GGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 197322 0.66 0.678811
Target:  5'- gGCGGCUGCUGCCcgaGCu-GGACCg--- -3'
miRNA:   3'- -CGCCGGCGGCGGa--CGcuCCUGGagag -5'
30162 3' -63.5 NC_006273.1 + 129745 0.66 0.678811
Target:  5'- -aGGCCGCCGCC-GUGGGuuUCUUUUu -3'
miRNA:   3'- cgCCGGCGGCGGaCGCUCcuGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 2429 0.66 0.678811
Target:  5'- gGCGGCUGCUGCCcgaGCu-GGACCg--- -3'
miRNA:   3'- -CGCCGGCGGCGGa--CGcuCCUGGagag -5'
30162 3' -63.5 NC_006273.1 + 179253 0.66 0.678811
Target:  5'- uCGGUCGCCGCCUcCGcGGcCCgUUUCg -3'
miRNA:   3'- cGCCGGCGGCGGAcGCuCCuGG-AGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.