miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30162 3' -63.5 NC_006273.1 + 153801 1.11 0.000757
Target:  5'- cGCGGCCGCCGCCUGCGAGGACCUCUCg -3'
miRNA:   3'- -CGCCGGCGGCGGACGCUCCUGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 162815 0.82 0.078858
Target:  5'- cGCGGUCGCCGCagCUGCG-GGGCCUCaUCg -3'
miRNA:   3'- -CGCCGGCGGCG--GACGCuCCUGGAG-AG- -5'
30162 3' -63.5 NC_006273.1 + 163851 0.8 0.103304
Target:  5'- gGCaGCgGCCGCCgGCGAGGGCC-CUCg -3'
miRNA:   3'- -CGcCGgCGGCGGaCGCUCCUGGaGAG- -5'
30162 3' -63.5 NC_006273.1 + 190358 0.77 0.183145
Target:  5'- aGCaGGCCGCCGCC-GUGGGGGCCg--- -3'
miRNA:   3'- -CG-CCGGCGGCGGaCGCUCCUGGagag -5'
30162 3' -63.5 NC_006273.1 + 213249 0.76 0.196309
Target:  5'- aCGGCCGCCGCCgcuaccGCaGAGG-CUUCUCc -3'
miRNA:   3'- cGCCGGCGGCGGa-----CG-CUCCuGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 78693 0.75 0.240837
Target:  5'- cGCGGgcaCCGCCGCCggagGCGcGGuucCCUCUCu -3'
miRNA:   3'- -CGCC---GGCGGCGGa---CGCuCCu--GGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 63830 0.75 0.240837
Target:  5'- aGCGGCa--CGCC-GCGAGuGACCUCUCc -3'
miRNA:   3'- -CGCCGgcgGCGGaCGCUC-CUGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 96097 0.74 0.283502
Target:  5'- cGCGGUCGCCGCCUGuUccgugaugcuaccuaGAGGGCgCUgUCg -3'
miRNA:   3'- -CGCCGGCGGCGGAC-G---------------CUCCUG-GAgAG- -5'
30162 3' -63.5 NC_006273.1 + 201143 0.74 0.287212
Target:  5'- uCGGCCGCUGCCUGCcGGcGGCC-CUg -3'
miRNA:   3'- cGCCGGCGGCGGACGcUC-CUGGaGAg -5'
30162 3' -63.5 NC_006273.1 + 133314 0.73 0.29348
Target:  5'- uGUGGCCGCCGCUgcuCGAGcACCUCa- -3'
miRNA:   3'- -CGCCGGCGGCGGac-GCUCcUGGAGag -5'
30162 3' -63.5 NC_006273.1 + 148512 0.73 0.29348
Target:  5'- gGCaGCCGCCGCUacGCGAcuaccuggggccGGACCUCUUu -3'
miRNA:   3'- -CGcCGGCGGCGGa-CGCU------------CCUGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 198721 0.73 0.299853
Target:  5'- cGCGaGuuGCUgGCCUGCGAGGACaccgccgCUCg -3'
miRNA:   3'- -CGC-CggCGG-CGGACGCUCCUGga-----GAG- -5'
30162 3' -63.5 NC_006273.1 + 13591 0.73 0.326414
Target:  5'- gGCGGCCcggGCCGCCgUGCugGAGGGCCg--- -3'
miRNA:   3'- -CGCCGG---CGGCGG-ACG--CUCCUGGagag -5'
30162 3' -63.5 NC_006273.1 + 94542 0.72 0.369448
Target:  5'- aGCGGCCGCgcacCGCCUGUaac-ACCUCUCu -3'
miRNA:   3'- -CGCCGGCG----GCGGACGcuccUGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 93582 0.71 0.384631
Target:  5'- aGCGGCgGCgGCCUGCGcGG-CCUgUa -3'
miRNA:   3'- -CGCCGgCGgCGGACGCuCCuGGAgAg -5'
30162 3' -63.5 NC_006273.1 + 76623 0.71 0.392376
Target:  5'- cGUGGCCGCgGCCgGCG---GCCUCUUg -3'
miRNA:   3'- -CGCCGGCGgCGGaCGCuccUGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 81601 0.71 0.408166
Target:  5'- gGCGGCCGCgGCCgcgGCGGaGGCCg--- -3'
miRNA:   3'- -CGCCGGCGgCGGa--CGCUcCUGGagag -5'
30162 3' -63.5 NC_006273.1 + 189508 0.71 0.408166
Target:  5'- cCGGCCGCCGCgCUGUGugagaguuccAGGGCCg--- -3'
miRNA:   3'- cGCCGGCGGCG-GACGC----------UCCUGGagag -5'
30162 3' -63.5 NC_006273.1 + 122264 0.71 0.4154
Target:  5'- uGCGGCCGCCGCCUuacauagGCaGGcGACCa--- -3'
miRNA:   3'- -CGCCGGCGGCGGA-------CGcUC-CUGGagag -5'
30162 3' -63.5 NC_006273.1 + 71548 0.71 0.427629
Target:  5'- gGCGGCCGCUGCCgGCGAcuugcgacaaccGGAgcagaggaucguuguCCUCg- -3'
miRNA:   3'- -CGCCGGCGGCGGaCGCU------------CCU---------------GGAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.