miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30162 3' -63.5 NC_006273.1 + 201236 0.66 0.669402
Target:  5'- cGCGaGCCGaaGCg-GCGuugaAGGACCUCUa -3'
miRNA:   3'- -CGC-CGGCggCGgaCGC----UCCUGGAGAg -5'
30162 3' -63.5 NC_006273.1 + 114454 0.66 0.669402
Target:  5'- gGCGGCgG-CGCCaugGCGAGcGCCUC-Ca -3'
miRNA:   3'- -CGCCGgCgGCGGa--CGCUCcUGGAGaG- -5'
30162 3' -63.5 NC_006273.1 + 145678 0.66 0.659967
Target:  5'- gGCGGUCGCaugcugggCGCUaGCGuGGACCUaccuaUCg -3'
miRNA:   3'- -CGCCGGCG--------GCGGaCGCuCCUGGAg----AG- -5'
30162 3' -63.5 NC_006273.1 + 30220 0.66 0.659967
Target:  5'- cGCGGCCa--GCgUgGCGAGGACaCUUUCc -3'
miRNA:   3'- -CGCCGGcggCGgA-CGCUCCUG-GAGAG- -5'
30162 3' -63.5 NC_006273.1 + 170619 0.66 0.659967
Target:  5'- gGCaGCCGcCCGCCgGCGGGcaGCUUCUUu -3'
miRNA:   3'- -CGcCGGC-GGCGGaCGCUCc-UGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 154331 0.66 0.659967
Target:  5'- aGCGGCUGCacgagcagaucCGCCUgaGCGAGcGCCaccgUCUCu -3'
miRNA:   3'- -CGCCGGCG-----------GCGGA--CGCUCcUGG----AGAG- -5'
30162 3' -63.5 NC_006273.1 + 42209 0.67 0.650513
Target:  5'- aCGGCCGCCGaacgggCaGCGuGGGCUUCg- -3'
miRNA:   3'- cGCCGGCGGCg-----GaCGCuCCUGGAGag -5'
30162 3' -63.5 NC_006273.1 + 165959 0.67 0.650513
Target:  5'- aGCGG-CGCCGCCaUGCcaGGGGucgGCCaucgUCUCg -3'
miRNA:   3'- -CGCCgGCGGCGG-ACG--CUCC---UGG----AGAG- -5'
30162 3' -63.5 NC_006273.1 + 202054 0.67 0.650513
Target:  5'- cGCGGCUGCCGCaguucaGCucGG-CgCUCUCg -3'
miRNA:   3'- -CGCCGGCGGCGga----CGcuCCuG-GAGAG- -5'
30162 3' -63.5 NC_006273.1 + 21745 0.67 0.641047
Target:  5'- gGCGGUagaucucaGCUGCCUG--GGGGCCUCg- -3'
miRNA:   3'- -CGCCGg-------CGGCGGACgcUCCUGGAGag -5'
30162 3' -63.5 NC_006273.1 + 115196 0.67 0.641047
Target:  5'- gGCGGCUcgcuggaagccgGUCGUCUGCGAcuccuGGACCUg-- -3'
miRNA:   3'- -CGCCGG------------CGGCGGACGCU-----CCUGGAgag -5'
30162 3' -63.5 NC_006273.1 + 73768 0.67 0.641047
Target:  5'- aGCGG-CGCCGCCaGCGGcGACCa--- -3'
miRNA:   3'- -CGCCgGCGGCGGaCGCUcCUGGagag -5'
30162 3' -63.5 NC_006273.1 + 162529 0.67 0.641047
Target:  5'- cGUGGCCGuCCGCa--CGAuGGCCUUUCu -3'
miRNA:   3'- -CGCCGGC-GGCGgacGCUcCUGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 85793 0.67 0.641047
Target:  5'- aGCGGCaucuagacCGCCGCCacucGCGuGGuCCgCUCg -3'
miRNA:   3'- -CGCCG--------GCGGCGGa---CGCuCCuGGaGAG- -5'
30162 3' -63.5 NC_006273.1 + 1521 0.67 0.631575
Target:  5'- cGCGGacuaCGCUGCUUGCGcacAGGcccgccaacACCUCUa -3'
miRNA:   3'- -CGCCg---GCGGCGGACGC---UCC---------UGGAGAg -5'
30162 3' -63.5 NC_006273.1 + 87378 0.67 0.631575
Target:  5'- uGuuGCCGCCGCUUGCGGcGcaACCUcCUCc -3'
miRNA:   3'- -CgcCGGCGGCGGACGCUcC--UGGA-GAG- -5'
30162 3' -63.5 NC_006273.1 + 72920 0.67 0.630628
Target:  5'- gGCGGCCGCCGCuccuuCUGCcgguucaucaaccGGGGAUCcCg- -3'
miRNA:   3'- -CGCCGGCGGCG-----GACG-------------CUCCUGGaGag -5'
30162 3' -63.5 NC_006273.1 + 215028 0.67 0.625891
Target:  5'- cGCGGuCCGCCGguguugggaccgcuuCCcGCG-GGAUgUCUCa -3'
miRNA:   3'- -CGCC-GGCGGC---------------GGaCGCuCCUGgAGAG- -5'
30162 3' -63.5 NC_006273.1 + 151300 0.67 0.622103
Target:  5'- -gGGCCGCCGCU--CGAGGcaguuccCCUUUCu -3'
miRNA:   3'- cgCCGGCGGCGGacGCUCCu------GGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 65051 0.67 0.622103
Target:  5'- cGCGGaaugucacaaCGCCGCCguguaucacUGCGAGGGUCUCcaUCa -3'
miRNA:   3'- -CGCCg---------GCGGCGG---------ACGCUCCUGGAG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.