miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30162 3' -63.5 NC_006273.1 + 933 0.69 0.519575
Target:  5'- cGCGGCCGCgggGCCg--GAGGGCCUUc- -3'
miRNA:   3'- -CGCCGGCGg--CGGacgCUCCUGGAGag -5'
30162 3' -63.5 NC_006273.1 + 1521 0.67 0.631575
Target:  5'- cGCGGacuaCGCUGCUUGCGcacAGGcccgccaacACCUCUa -3'
miRNA:   3'- -CGCCg---GCGGCGGACGC---UCC---------UGGAGAg -5'
30162 3' -63.5 NC_006273.1 + 2008 0.67 0.620209
Target:  5'- aGCGGCacggagacggagGCCGCCgGCGGGGACg---- -3'
miRNA:   3'- -CGCCGg-----------CGGCGGaCGCUCCUGgagag -5'
30162 3' -63.5 NC_006273.1 + 2429 0.66 0.678811
Target:  5'- gGCGGCUGCUGCCcgaGCu-GGACCg--- -3'
miRNA:   3'- -CGCCGGCGGCGGa--CGcuCCUGGagag -5'
30162 3' -63.5 NC_006273.1 + 2556 0.66 0.688186
Target:  5'- -gGGCCGCgGCgagGCuGAGGugCUCa- -3'
miRNA:   3'- cgCCGGCGgCGga-CG-CUCCugGAGag -5'
30162 3' -63.5 NC_006273.1 + 4913 0.67 0.603184
Target:  5'- cCGGCCGauuCGCCcGCcGGGGCUUCUg -3'
miRNA:   3'- cGCCGGCg--GCGGaCGcUCCUGGAGAg -5'
30162 3' -63.5 NC_006273.1 + 5526 0.66 0.68725
Target:  5'- cGCGGuCCGgcucagcCCGCgUGCGAaGAucguCCUCUCg -3'
miRNA:   3'- -CGCC-GGC-------GGCGgACGCUcCU----GGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 13591 0.73 0.326414
Target:  5'- gGCGGCCcggGCCGCCgUGCugGAGGGCCg--- -3'
miRNA:   3'- -CGCCGG---CGGCGG-ACG--CUCCUGGagag -5'
30162 3' -63.5 NC_006273.1 + 21675 0.66 0.697523
Target:  5'- gGUGGCCGacgugcaCGaCCUGCGccacucGGACCgCUCc -3'
miRNA:   3'- -CGCCGGCg------GC-GGACGCu-----CCUGGaGAG- -5'
30162 3' -63.5 NC_006273.1 + 21745 0.67 0.641047
Target:  5'- gGCGGUagaucucaGCUGCCUG--GGGGCCUCg- -3'
miRNA:   3'- -CGCCGg-------CGGCGGACgcUCCUGGAGag -5'
30162 3' -63.5 NC_006273.1 + 24940 0.68 0.58434
Target:  5'- cGCGGCCcuggcuugGCC-CCUGCGGcugcuuuuGGGCUUCUa -3'
miRNA:   3'- -CGCCGG--------CGGcGGACGCU--------CCUGGAGAg -5'
30162 3' -63.5 NC_006273.1 + 30220 0.66 0.659967
Target:  5'- cGCGGCCa--GCgUgGCGAGGACaCUUUCc -3'
miRNA:   3'- -CGCCGGcggCGgA-CGCUCCUG-GAGAG- -5'
30162 3' -63.5 NC_006273.1 + 30968 0.7 0.440906
Target:  5'- cGUGGCCGCCugGCUugUGCGuGGcaACUUCUCc -3'
miRNA:   3'- -CGCCGGCGG--CGG--ACGCuCC--UGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 37281 0.66 0.68725
Target:  5'- cGUGGCCGCCGagcagccCUUGCGAcGGCCg--- -3'
miRNA:   3'- -CGCCGGCGGC-------GGACGCUcCUGGagag -5'
30162 3' -63.5 NC_006273.1 + 40613 0.7 0.466414
Target:  5'- cGCGGCUGCCccgGCCUuucaccggagacGgGGGGGCaCUCUUg -3'
miRNA:   3'- -CGCCGGCGG---CGGA------------CgCUCCUG-GAGAG- -5'
30162 3' -63.5 NC_006273.1 + 42209 0.67 0.650513
Target:  5'- aCGGCCGCCGaacgggCaGCGuGGGCUUCg- -3'
miRNA:   3'- cGCCGGCGGCg-----GaCGCuCCUGGAGag -5'
30162 3' -63.5 NC_006273.1 + 45038 0.66 0.706812
Target:  5'- aCGGCgGCgGCCUGCucgcacGGACCUa-- -3'
miRNA:   3'- cGCCGgCGgCGGACGcu----CCUGGAgag -5'
30162 3' -63.5 NC_006273.1 + 63830 0.75 0.240837
Target:  5'- aGCGGCa--CGCC-GCGAGuGACCUCUCc -3'
miRNA:   3'- -CGCCGgcgGCGGaCGCUC-CUGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 65051 0.67 0.622103
Target:  5'- cGCGGaaugucacaaCGCCGCCguguaucacUGCGAGGGUCUCcaUCa -3'
miRNA:   3'- -CGCCg---------GCGGCGG---------ACGCUCCUGGAG--AG- -5'
30162 3' -63.5 NC_006273.1 + 67726 0.68 0.574959
Target:  5'- gGCGGCCGaccCCGCCguUGCGGccGCCgCUCa -3'
miRNA:   3'- -CGCCGGC---GGCGG--ACGCUccUGGaGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.