miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30162 3' -63.5 NC_006273.1 + 1521 0.67 0.631575
Target:  5'- cGCGGacuaCGCUGCUUGCGcacAGGcccgccaacACCUCUa -3'
miRNA:   3'- -CGCCg---GCGGCGGACGC---UCC---------UGGAGAg -5'
30162 3' -63.5 NC_006273.1 + 75262 0.68 0.547045
Target:  5'- cGCuGGCCGCCGCg-GCGGccGCCUCa- -3'
miRNA:   3'- -CG-CCGGCGGCGgaCGCUccUGGAGag -5'
30162 3' -63.5 NC_006273.1 + 191487 0.68 0.556306
Target:  5'- gGC-GCCGCCGCC-GCuuGGACCUUc- -3'
miRNA:   3'- -CGcCGGCGGCGGaCGcuCCUGGAGag -5'
30162 3' -63.5 NC_006273.1 + 132363 0.67 0.603184
Target:  5'- cGCGGCCGCUGCC-GCcgcGGCgUUUCg -3'
miRNA:   3'- -CGCCGGCGGCGGaCGcucCUGgAGAG- -5'
30162 3' -63.5 NC_006273.1 + 4913 0.67 0.603184
Target:  5'- cCGGCCGauuCGCCcGCcGGGGCUUCUg -3'
miRNA:   3'- cGCCGGCg--GCGGaCGcUCCUGGAGAg -5'
30162 3' -63.5 NC_006273.1 + 111878 0.67 0.610746
Target:  5'- gGUGGCaCGCCacccacaGCCUGCaguacgccGAGGGCCUgcgccagCUCa -3'
miRNA:   3'- -CGCCG-GCGG-------CGGACG--------CUCCUGGA-------GAG- -5'
30162 3' -63.5 NC_006273.1 + 196901 0.67 0.620209
Target:  5'- aGCGGCacggagacggagGCCGCCgGCGGGGACg---- -3'
miRNA:   3'- -CGCCGg-----------CGGCGGaCGCUCCUGgagag -5'
30162 3' -63.5 NC_006273.1 + 151300 0.67 0.622103
Target:  5'- -gGGCCGCCGCU--CGAGGcaguuccCCUUUCu -3'
miRNA:   3'- cgCCGGCGGCGGacGCUCCu------GGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 65051 0.67 0.622103
Target:  5'- cGCGGaaugucacaaCGCCGCCguguaucacUGCGAGGGUCUCcaUCa -3'
miRNA:   3'- -CGCCg---------GCGGCGG---------ACGCUCCUGGAG--AG- -5'
30162 3' -63.5 NC_006273.1 + 120294 0.68 0.537833
Target:  5'- cGCGGCCGCUuCC-GaCGAGGGuCC-CUCa -3'
miRNA:   3'- -CGCCGGCGGcGGaC-GCUCCU-GGaGAG- -5'
30162 3' -63.5 NC_006273.1 + 195825 0.69 0.519575
Target:  5'- cGCGGCCGCgggGCCg--GAGGGCCUUc- -3'
miRNA:   3'- -CGCCGGCGg--CGGacgCUCCUGGAGag -5'
30162 3' -63.5 NC_006273.1 + 120946 0.7 0.475086
Target:  5'- gGC-GCCGCCGCCgGUGAcgcgGGGCgUCUUa -3'
miRNA:   3'- -CGcCGGCGGCGGaCGCU----CCUGgAGAG- -5'
30162 3' -63.5 NC_006273.1 + 163851 0.8 0.103304
Target:  5'- gGCaGCgGCCGCCgGCGAGGGCC-CUCg -3'
miRNA:   3'- -CGcCGgCGGCGGaCGCUCCUGGaGAG- -5'
30162 3' -63.5 NC_006273.1 + 96097 0.74 0.283502
Target:  5'- cGCGGUCGCCGCCUGuUccgugaugcuaccuaGAGGGCgCUgUCg -3'
miRNA:   3'- -CGCCGGCGGCGGAC-G---------------CUCCUG-GAgAG- -5'
30162 3' -63.5 NC_006273.1 + 148512 0.73 0.29348
Target:  5'- gGCaGCCGCCGCUacGCGAcuaccuggggccGGACCUCUUu -3'
miRNA:   3'- -CGcCGGCGGCGGa-CGCU------------CCUGGAGAG- -5'
30162 3' -63.5 NC_006273.1 + 122264 0.71 0.4154
Target:  5'- uGCGGCCGCCGCCUuacauagGCaGGcGACCa--- -3'
miRNA:   3'- -CGCCGGCGGCGGA-------CGcUC-CUGGagag -5'
30162 3' -63.5 NC_006273.1 + 189798 0.7 0.449322
Target:  5'- cGCGGCCaugGCCGCCUGCacGGcagcuuguaccGCCUCg- -3'
miRNA:   3'- -CGCCGG---CGGCGGACGcuCC-----------UGGAGag -5'
30162 3' -63.5 NC_006273.1 + 105192 0.7 0.457825
Target:  5'- aCGGUCGCCGCC-GUGucGGCCUUUg -3'
miRNA:   3'- cGCCGGCGGCGGaCGCucCUGGAGAg -5'
30162 3' -63.5 NC_006273.1 + 134033 0.7 0.457825
Target:  5'- aCGGCCGCCGCCUGguuGGuguuGCC-CUCc -3'
miRNA:   3'- cGCCGGCGGCGGACgcuCC----UGGaGAG- -5'
30162 3' -63.5 NC_006273.1 + 40613 0.7 0.466414
Target:  5'- cGCGGCUGCCccgGCCUuucaccggagacGgGGGGGCaCUCUUg -3'
miRNA:   3'- -CGCCGGCGG---CGGA------------CgCUCCUG-GAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.