miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30162 5' -47 NC_006273.1 + 53286 0.66 0.999995
Target:  5'- aGGGGCGAU-UCA-CGUCAcUGACGGc -3'
miRNA:   3'- cUCUCGUUAuAGUaGCAGUaGCUGCU- -5'
30162 5' -47 NC_006273.1 + 48866 0.66 0.999995
Target:  5'- aGGGGCGAgucCGUCGUCAccaguUUGACGc -3'
miRNA:   3'- cUCUCGUUauaGUAGCAGU-----AGCUGCu -5'
30162 5' -47 NC_006273.1 + 23788 0.66 0.999993
Target:  5'- cGAuGGCAG-GUCAUCGUCAcgcuguuugugaUCGGCGu -3'
miRNA:   3'- -CUcUCGUUaUAGUAGCAGU------------AGCUGCu -5'
30162 5' -47 NC_006273.1 + 118826 0.66 0.999993
Target:  5'- --cGGCcGUGUCGUCGUgGUUGAUGu -3'
miRNA:   3'- cucUCGuUAUAGUAGCAgUAGCUGCu -5'
30162 5' -47 NC_006273.1 + 163367 0.66 0.999993
Target:  5'- -cGGGCGGgacUGUCGUCGUCAaccacagcagcgUCG-CGAg -3'
miRNA:   3'- cuCUCGUU---AUAGUAGCAGU------------AGCuGCU- -5'
30162 5' -47 NC_006273.1 + 158817 0.66 0.999993
Target:  5'- -uGAGCGuuuuguuUCAUCGUCGUgGugGu -3'
miRNA:   3'- cuCUCGUuau----AGUAGCAGUAgCugCu -5'
30162 5' -47 NC_006273.1 + 10172 0.66 0.999993
Target:  5'- -uGAGUuccgcgGUCGUCGUCGUCGGu-- -3'
miRNA:   3'- cuCUCGuua---UAGUAGCAGUAGCUgcu -5'
30162 5' -47 NC_006273.1 + 201970 0.66 0.999992
Target:  5'- aGGAGCGAUAUCGaCGUacuuacgaaaCGGCGAu -3'
miRNA:   3'- cUCUCGUUAUAGUaGCAgua-------GCUGCU- -5'
30162 5' -47 NC_006273.1 + 175055 0.66 0.99999
Target:  5'- -cGAGUggUGgcggCGUCGUCAgUUGGCGu -3'
miRNA:   3'- cuCUCGuuAUa---GUAGCAGU-AGCUGCu -5'
30162 5' -47 NC_006273.1 + 102814 0.66 0.99999
Target:  5'- -cGAGaua-GUCGUCGUCAUCGAa-- -3'
miRNA:   3'- cuCUCguuaUAGUAGCAGUAGCUgcu -5'
30162 5' -47 NC_006273.1 + 214458 0.66 0.999986
Target:  5'- --cAGCGuauUUGUCGUCAUUGGCGGc -3'
miRNA:   3'- cucUCGUuauAGUAGCAGUAGCUGCU- -5'
30162 5' -47 NC_006273.1 + 157831 0.66 0.999986
Target:  5'- aAGGGCAcgAUGUCGUgGUUAgCGGCGu -3'
miRNA:   3'- cUCUCGU--UAUAGUAgCAGUaGCUGCu -5'
30162 5' -47 NC_006273.1 + 216235 0.66 0.999986
Target:  5'- -uGGGUAGUGcUUAUCGUCGUCuucuuGGCGGu -3'
miRNA:   3'- cuCUCGUUAU-AGUAGCAGUAG-----CUGCU- -5'
30162 5' -47 NC_006273.1 + 66585 0.67 0.999981
Target:  5'- aAGAGgGAU-UCGUCGUCAUaCG-CGAa -3'
miRNA:   3'- cUCUCgUUAuAGUAGCAGUA-GCuGCU- -5'
30162 5' -47 NC_006273.1 + 183875 0.67 0.999981
Target:  5'- cGAGAGCGAguUGUCcUCGUCGcCGcCGu -3'
miRNA:   3'- -CUCUCGUU--AUAGuAGCAGUaGCuGCu -5'
30162 5' -47 NC_006273.1 + 157164 0.67 0.999974
Target:  5'- --uGGCcugagGUCAUCGUCGUCcauGACGAc -3'
miRNA:   3'- cucUCGuua--UAGUAGCAGUAG---CUGCU- -5'
30162 5' -47 NC_006273.1 + 175304 0.67 0.999954
Target:  5'- -uGGGCAaaaaGUGUCAUUGUCA-CGGCu- -3'
miRNA:   3'- cuCUCGU----UAUAGUAGCAGUaGCUGcu -5'
30162 5' -47 NC_006273.1 + 161944 0.67 0.999954
Target:  5'- -uGGGCAccGUCAUCGUgGU-GGCGAg -3'
miRNA:   3'- cuCUCGUuaUAGUAGCAgUAgCUGCU- -5'
30162 5' -47 NC_006273.1 + 161849 0.67 0.999938
Target:  5'- aGGAGCA----CGUgaGUCGUCGGCGAg -3'
miRNA:   3'- cUCUCGUuauaGUAg-CAGUAGCUGCU- -5'
30162 5' -47 NC_006273.1 + 18609 0.67 0.999938
Target:  5'- -cGAGUggUA-CGUCGUCGgccUCGugGGc -3'
miRNA:   3'- cuCUCGuuAUaGUAGCAGU---AGCugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.