miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30162 5' -47 NC_006273.1 + 153837 1.11 0.02631
Target:  5'- cGAGAGCAAUAUCAUCGUCAUCGACGAg -3'
miRNA:   3'- -CUCUCGUUAUAGUAGCAGUAGCUGCU- -5'
30162 5' -47 NC_006273.1 + 148038 0.8 0.830768
Target:  5'- cGGGAGCAGaacCcgCGUCGUCGACGAc -3'
miRNA:   3'- -CUCUCGUUauaGuaGCAGUAGCUGCU- -5'
30162 5' -47 NC_006273.1 + 162972 0.76 0.94927
Target:  5'- cGGAGCGGUGguuUCGUCGccgUCGUCGACGu -3'
miRNA:   3'- cUCUCGUUAU---AGUAGC---AGUAGCUGCu -5'
30162 5' -47 NC_006273.1 + 3755 0.75 0.971066
Target:  5'- aGGAGCGGUAaggaaUCAUCGUCGucuuucauucuUCGAUGAu -3'
miRNA:   3'- cUCUCGUUAU-----AGUAGCAGU-----------AGCUGCU- -5'
30162 5' -47 NC_006273.1 + 152733 0.74 0.981215
Target:  5'- aGAGAcCAuaGUCGUCGUUAUCGGCGu -3'
miRNA:   3'- -CUCUcGUuaUAGUAGCAGUAGCUGCu -5'
30162 5' -47 NC_006273.1 + 117928 0.72 0.99572
Target:  5'- --cGGCGGcGUCGUCGUCGUCcucgGACGAa -3'
miRNA:   3'- cucUCGUUaUAGUAGCAGUAG----CUGCU- -5'
30162 5' -47 NC_006273.1 + 97983 0.71 0.998159
Target:  5'- cGAGAGcCAAcGUCGcaggCGUCcgCGGCGAu -3'
miRNA:   3'- -CUCUC-GUUaUAGUa---GCAGuaGCUGCU- -5'
30162 5' -47 NC_006273.1 + 131128 0.69 0.999548
Target:  5'- ---cGCcGUGUCGUCGuaagcUCAUCGGCGGg -3'
miRNA:   3'- cucuCGuUAUAGUAGC-----AGUAGCUGCU- -5'
30162 5' -47 NC_006273.1 + 219680 0.69 0.999614
Target:  5'- cAGGGCGGUaAUCAcccgcucugcgcccUCGcgCGUCGACGAa -3'
miRNA:   3'- cUCUCGUUA-UAGU--------------AGCa-GUAGCUGCU- -5'
30162 5' -47 NC_006273.1 + 29217 0.69 0.999713
Target:  5'- --aAGCAGcGUCGUCGUCAcUCGugGc -3'
miRNA:   3'- cucUCGUUaUAGUAGCAGU-AGCugCu -5'
30162 5' -47 NC_006273.1 + 40980 0.69 0.999713
Target:  5'- --uGGCucgugGAUGUCGUCGUCAUUggaGACGAu -3'
miRNA:   3'- cucUCG-----UUAUAGUAGCAGUAG---CUGCU- -5'
30162 5' -47 NC_006273.1 + 184558 0.68 0.999863
Target:  5'- cGAGAGCcgcGAUAUCAaCGUCAcCGAgGu -3'
miRNA:   3'- -CUCUCG---UUAUAGUaGCAGUaGCUgCu -5'
30162 5' -47 NC_006273.1 + 30628 0.68 0.999919
Target:  5'- -cGAGCGAaaagaaacgAUCGUCGUCgcGUCGGCa- -3'
miRNA:   3'- cuCUCGUUa--------UAGUAGCAG--UAGCUGcu -5'
30162 5' -47 NC_006273.1 + 208476 0.68 0.999919
Target:  5'- gGAGAuCGA---CAUCGUCAUCGAcCGAc -3'
miRNA:   3'- -CUCUcGUUauaGUAGCAGUAGCU-GCU- -5'
30162 5' -47 NC_006273.1 + 161849 0.67 0.999938
Target:  5'- aGGAGCA----CGUgaGUCGUCGGCGAg -3'
miRNA:   3'- cUCUCGUuauaGUAg-CAGUAGCUGCU- -5'
30162 5' -47 NC_006273.1 + 18609 0.67 0.999938
Target:  5'- -cGAGUggUA-CGUCGUCGgccUCGugGGc -3'
miRNA:   3'- cuCUCGuuAUaGUAGCAGU---AGCugCU- -5'
30162 5' -47 NC_006273.1 + 124038 0.67 0.999938
Target:  5'- aGGAGgAGacUGUCGUCGUCGguacUGGCGAc -3'
miRNA:   3'- cUCUCgUU--AUAGUAGCAGUa---GCUGCU- -5'
30162 5' -47 NC_006273.1 + 175304 0.67 0.999954
Target:  5'- -uGGGCAaaaaGUGUCAUUGUCA-CGGCu- -3'
miRNA:   3'- cuCUCGU----UAUAGUAGCAGUaGCUGcu -5'
30162 5' -47 NC_006273.1 + 161944 0.67 0.999954
Target:  5'- -uGGGCAccGUCAUCGUgGU-GGCGAg -3'
miRNA:   3'- cuCUCGUuaUAGUAGCAgUAgCUGCU- -5'
30162 5' -47 NC_006273.1 + 157164 0.67 0.999974
Target:  5'- --uGGCcugagGUCAUCGUCGUCcauGACGAc -3'
miRNA:   3'- cucUCGuua--UAGUAGCAGUAG---CUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.