Results 21 - 35 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30162 | 5' | -47 | NC_006273.1 | + | 124038 | 0.67 | 0.999938 |
Target: 5'- aGGAGgAGacUGUCGUCGUCGguacUGGCGAc -3' miRNA: 3'- cUCUCgUU--AUAGUAGCAGUa---GCUGCU- -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 30628 | 0.68 | 0.999919 |
Target: 5'- -cGAGCGAaaagaaacgAUCGUCGUCgcGUCGGCa- -3' miRNA: 3'- cuCUCGUUa--------UAGUAGCAG--UAGCUGcu -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 208476 | 0.68 | 0.999919 |
Target: 5'- gGAGAuCGA---CAUCGUCAUCGAcCGAc -3' miRNA: 3'- -CUCUcGUUauaGUAGCAGUAGCU-GCU- -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 184558 | 0.68 | 0.999863 |
Target: 5'- cGAGAGCcgcGAUAUCAaCGUCAcCGAgGu -3' miRNA: 3'- -CUCUCG---UUAUAGUaGCAGUaGCUgCu -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 29217 | 0.69 | 0.999713 |
Target: 5'- --aAGCAGcGUCGUCGUCAcUCGugGc -3' miRNA: 3'- cucUCGUUaUAGUAGCAGU-AGCugCu -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 40980 | 0.69 | 0.999713 |
Target: 5'- --uGGCucgugGAUGUCGUCGUCAUUggaGACGAu -3' miRNA: 3'- cucUCG-----UUAUAGUAGCAGUAG---CUGCU- -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 219680 | 0.69 | 0.999614 |
Target: 5'- cAGGGCGGUaAUCAcccgcucugcgcccUCGcgCGUCGACGAa -3' miRNA: 3'- cUCUCGUUA-UAGU--------------AGCa-GUAGCUGCU- -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 131128 | 0.69 | 0.999548 |
Target: 5'- ---cGCcGUGUCGUCGuaagcUCAUCGGCGGg -3' miRNA: 3'- cucuCGuUAUAGUAGC-----AGUAGCUGCU- -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 97983 | 0.71 | 0.998159 |
Target: 5'- cGAGAGcCAAcGUCGcaggCGUCcgCGGCGAu -3' miRNA: 3'- -CUCUC-GUUaUAGUa---GCAGuaGCUGCU- -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 117928 | 0.72 | 0.99572 |
Target: 5'- --cGGCGGcGUCGUCGUCGUCcucgGACGAa -3' miRNA: 3'- cucUCGUUaUAGUAGCAGUAG----CUGCU- -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 152733 | 0.74 | 0.981215 |
Target: 5'- aGAGAcCAuaGUCGUCGUUAUCGGCGu -3' miRNA: 3'- -CUCUcGUuaUAGUAGCAGUAGCUGCu -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 3755 | 0.75 | 0.971066 |
Target: 5'- aGGAGCGGUAaggaaUCAUCGUCGucuuucauucuUCGAUGAu -3' miRNA: 3'- cUCUCGUUAU-----AGUAGCAGU-----------AGCUGCU- -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 162972 | 0.76 | 0.94927 |
Target: 5'- cGGAGCGGUGguuUCGUCGccgUCGUCGACGu -3' miRNA: 3'- cUCUCGUUAU---AGUAGC---AGUAGCUGCu -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 148038 | 0.8 | 0.830768 |
Target: 5'- cGGGAGCAGaacCcgCGUCGUCGACGAc -3' miRNA: 3'- -CUCUCGUUauaGuaGCAGUAGCUGCU- -5' |
|||||||
30162 | 5' | -47 | NC_006273.1 | + | 153837 | 1.11 | 0.02631 |
Target: 5'- cGAGAGCAAUAUCAUCGUCAUCGACGAg -3' miRNA: 3'- -CUCUCGUUAUAGUAGCAGUAGCUGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home