Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30162 | 5' | -47 | NC_006273.1 | + | 3755 | 0.75 | 0.971066 |
Target: 5'- aGGAGCGGUAaggaaUCAUCGUCGucuuucauucuUCGAUGAu -3' miRNA: 3'- cUCUCGUUAU-----AGUAGCAGU-----------AGCUGCU- -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 10172 | 0.66 | 0.999993 |
Target: 5'- -uGAGUuccgcgGUCGUCGUCGUCGGu-- -3' miRNA: 3'- cuCUCGuua---UAGUAGCAGUAGCUgcu -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 18609 | 0.67 | 0.999938 |
Target: 5'- -cGAGUggUA-CGUCGUCGgccUCGugGGc -3' miRNA: 3'- cuCUCGuuAUaGUAGCAGU---AGCugCU- -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 23788 | 0.66 | 0.999993 |
Target: 5'- cGAuGGCAG-GUCAUCGUCAcgcuguuugugaUCGGCGu -3' miRNA: 3'- -CUcUCGUUaUAGUAGCAGU------------AGCUGCu -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 29217 | 0.69 | 0.999713 |
Target: 5'- --aAGCAGcGUCGUCGUCAcUCGugGc -3' miRNA: 3'- cucUCGUUaUAGUAGCAGU-AGCugCu -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 30628 | 0.68 | 0.999919 |
Target: 5'- -cGAGCGAaaagaaacgAUCGUCGUCgcGUCGGCa- -3' miRNA: 3'- cuCUCGUUa--------UAGUAGCAG--UAGCUGcu -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 40980 | 0.69 | 0.999713 |
Target: 5'- --uGGCucgugGAUGUCGUCGUCAUUggaGACGAu -3' miRNA: 3'- cucUCG-----UUAUAGUAGCAGUAG---CUGCU- -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 48866 | 0.66 | 0.999995 |
Target: 5'- aGGGGCGAgucCGUCGUCAccaguUUGACGc -3' miRNA: 3'- cUCUCGUUauaGUAGCAGU-----AGCUGCu -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 53286 | 0.66 | 0.999995 |
Target: 5'- aGGGGCGAU-UCA-CGUCAcUGACGGc -3' miRNA: 3'- cUCUCGUUAuAGUaGCAGUaGCUGCU- -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 66585 | 0.67 | 0.999981 |
Target: 5'- aAGAGgGAU-UCGUCGUCAUaCG-CGAa -3' miRNA: 3'- cUCUCgUUAuAGUAGCAGUA-GCuGCU- -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 97983 | 0.71 | 0.998159 |
Target: 5'- cGAGAGcCAAcGUCGcaggCGUCcgCGGCGAu -3' miRNA: 3'- -CUCUC-GUUaUAGUa---GCAGuaGCUGCU- -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 102814 | 0.66 | 0.99999 |
Target: 5'- -cGAGaua-GUCGUCGUCAUCGAa-- -3' miRNA: 3'- cuCUCguuaUAGUAGCAGUAGCUgcu -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 117928 | 0.72 | 0.99572 |
Target: 5'- --cGGCGGcGUCGUCGUCGUCcucgGACGAa -3' miRNA: 3'- cucUCGUUaUAGUAGCAGUAG----CUGCU- -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 118826 | 0.66 | 0.999993 |
Target: 5'- --cGGCcGUGUCGUCGUgGUUGAUGu -3' miRNA: 3'- cucUCGuUAUAGUAGCAgUAGCUGCu -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 124038 | 0.67 | 0.999938 |
Target: 5'- aGGAGgAGacUGUCGUCGUCGguacUGGCGAc -3' miRNA: 3'- cUCUCgUU--AUAGUAGCAGUa---GCUGCU- -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 131128 | 0.69 | 0.999548 |
Target: 5'- ---cGCcGUGUCGUCGuaagcUCAUCGGCGGg -3' miRNA: 3'- cucuCGuUAUAGUAGC-----AGUAGCUGCU- -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 148038 | 0.8 | 0.830768 |
Target: 5'- cGGGAGCAGaacCcgCGUCGUCGACGAc -3' miRNA: 3'- -CUCUCGUUauaGuaGCAGUAGCUGCU- -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 152733 | 0.74 | 0.981215 |
Target: 5'- aGAGAcCAuaGUCGUCGUUAUCGGCGu -3' miRNA: 3'- -CUCUcGUuaUAGUAGCAGUAGCUGCu -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 153837 | 1.11 | 0.02631 |
Target: 5'- cGAGAGCAAUAUCAUCGUCAUCGACGAg -3' miRNA: 3'- -CUCUCGUUAUAGUAGCAGUAGCUGCU- -5' |
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30162 | 5' | -47 | NC_006273.1 | + | 157164 | 0.67 | 0.999974 |
Target: 5'- --uGGCcugagGUCAUCGUCGUCcauGACGAc -3' miRNA: 3'- cucUCGuua--UAGUAGCAGUAG---CUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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