miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30162 5' -47 NC_006273.1 + 153837 1.11 0.02631
Target:  5'- cGAGAGCAAUAUCAUCGUCAUCGACGAg -3'
miRNA:   3'- -CUCUCGUUAUAGUAGCAGUAGCUGCU- -5'
30162 5' -47 NC_006273.1 + 157164 0.67 0.999974
Target:  5'- --uGGCcugagGUCAUCGUCGUCcauGACGAc -3'
miRNA:   3'- cucUCGuua--UAGUAGCAGUAG---CUGCU- -5'
30162 5' -47 NC_006273.1 + 66585 0.67 0.999981
Target:  5'- aAGAGgGAU-UCGUCGUCAUaCG-CGAa -3'
miRNA:   3'- cUCUCgUUAuAGUAGCAGUA-GCuGCU- -5'
30162 5' -47 NC_006273.1 + 102814 0.66 0.99999
Target:  5'- -cGAGaua-GUCGUCGUCAUCGAa-- -3'
miRNA:   3'- cuCUCguuaUAGUAGCAGUAGCUgcu -5'
30162 5' -47 NC_006273.1 + 201970 0.66 0.999992
Target:  5'- aGGAGCGAUAUCGaCGUacuuacgaaaCGGCGAu -3'
miRNA:   3'- cUCUCGUUAUAGUaGCAgua-------GCUGCU- -5'
30162 5' -47 NC_006273.1 + 158817 0.66 0.999993
Target:  5'- -uGAGCGuuuuguuUCAUCGUCGUgGugGu -3'
miRNA:   3'- cuCUCGUuau----AGUAGCAGUAgCugCu -5'
30162 5' -47 NC_006273.1 + 163367 0.66 0.999993
Target:  5'- -cGGGCGGgacUGUCGUCGUCAaccacagcagcgUCG-CGAg -3'
miRNA:   3'- cuCUCGUU---AUAGUAGCAGU------------AGCuGCU- -5'
30162 5' -47 NC_006273.1 + 48866 0.66 0.999995
Target:  5'- aGGGGCGAgucCGUCGUCAccaguUUGACGc -3'
miRNA:   3'- cUCUCGUUauaGUAGCAGU-----AGCUGCu -5'
30162 5' -47 NC_006273.1 + 53286 0.66 0.999995
Target:  5'- aGGGGCGAU-UCA-CGUCAcUGACGGc -3'
miRNA:   3'- cUCUCGUUAuAGUaGCAGUaGCUGCU- -5'
30162 5' -47 NC_006273.1 + 124038 0.67 0.999938
Target:  5'- aGGAGgAGacUGUCGUCGUCGguacUGGCGAc -3'
miRNA:   3'- cUCUCgUU--AUAGUAGCAGUa---GCUGCU- -5'
30162 5' -47 NC_006273.1 + 30628 0.68 0.999919
Target:  5'- -cGAGCGAaaagaaacgAUCGUCGUCgcGUCGGCa- -3'
miRNA:   3'- cuCUCGUUa--------UAGUAGCAG--UAGCUGcu -5'
30162 5' -47 NC_006273.1 + 162972 0.76 0.94927
Target:  5'- cGGAGCGGUGguuUCGUCGccgUCGUCGACGu -3'
miRNA:   3'- cUCUCGUUAU---AGUAGC---AGUAGCUGCu -5'
30162 5' -47 NC_006273.1 + 3755 0.75 0.971066
Target:  5'- aGGAGCGGUAaggaaUCAUCGUCGucuuucauucuUCGAUGAu -3'
miRNA:   3'- cUCUCGUUAU-----AGUAGCAGU-----------AGCUGCU- -5'
30162 5' -47 NC_006273.1 + 152733 0.74 0.981215
Target:  5'- aGAGAcCAuaGUCGUCGUUAUCGGCGu -3'
miRNA:   3'- -CUCUcGUuaUAGUAGCAGUAGCUGCu -5'
30162 5' -47 NC_006273.1 + 117928 0.72 0.99572
Target:  5'- --cGGCGGcGUCGUCGUCGUCcucgGACGAa -3'
miRNA:   3'- cucUCGUUaUAGUAGCAGUAG----CUGCU- -5'
30162 5' -47 NC_006273.1 + 131128 0.69 0.999548
Target:  5'- ---cGCcGUGUCGUCGuaagcUCAUCGGCGGg -3'
miRNA:   3'- cucuCGuUAUAGUAGC-----AGUAGCUGCU- -5'
30162 5' -47 NC_006273.1 + 219680 0.69 0.999614
Target:  5'- cAGGGCGGUaAUCAcccgcucugcgcccUCGcgCGUCGACGAa -3'
miRNA:   3'- cUCUCGUUA-UAGU--------------AGCa-GUAGCUGCU- -5'
30162 5' -47 NC_006273.1 + 29217 0.69 0.999713
Target:  5'- --aAGCAGcGUCGUCGUCAcUCGugGc -3'
miRNA:   3'- cucUCGUUaUAGUAGCAGU-AGCugCu -5'
30162 5' -47 NC_006273.1 + 40980 0.69 0.999713
Target:  5'- --uGGCucgugGAUGUCGUCGUCAUUggaGACGAu -3'
miRNA:   3'- cucUCG-----UUAUAGUAGCAGUAG---CUGCU- -5'
30162 5' -47 NC_006273.1 + 10172 0.66 0.999993
Target:  5'- -uGAGUuccgcgGUCGUCGUCGUCGGu-- -3'
miRNA:   3'- cuCUCGuua---UAGUAGCAGUAGCUgcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.