miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30163 3' -58.2 NC_006273.1 + 103983 0.66 0.893221
Target:  5'- -aCUCGCcCAuGGAGGcGUGCGUGGg -3'
miRNA:   3'- uaGGGCGaGUuCCUCCuCGUGCACCg -5'
30163 3' -58.2 NC_006273.1 + 8891 0.66 0.886695
Target:  5'- -aCgCGCgCGAGGAGGAGaaaaacaaCACG-GGCa -3'
miRNA:   3'- uaGgGCGaGUUCCUCCUC--------GUGCaCCG- -5'
30163 3' -58.2 NC_006273.1 + 113754 0.66 0.87996
Target:  5'- uUCCCaC-CAAGGAcguGGccugcGGCACGUGGUg -3'
miRNA:   3'- uAGGGcGaGUUCCU---CC-----UCGUGCACCG- -5'
30163 3' -58.2 NC_006273.1 + 21364 0.66 0.875819
Target:  5'- cGUCCCGCuagaauggaccgUCGAGGAGGuAGUccccuaccuagagagGC-UGGCg -3'
miRNA:   3'- -UAGGGCG------------AGUUCCUCC-UCG---------------UGcACCG- -5'
30163 3' -58.2 NC_006273.1 + 76533 0.66 0.873018
Target:  5'- cGUCgCCGCUCGGcgcGGcgcacGAGgACGUGGCg -3'
miRNA:   3'- -UAG-GGCGAGUU---CCuc---CUCgUGCACCG- -5'
30163 3' -58.2 NC_006273.1 + 159334 0.66 0.873018
Target:  5'- cGUCaCCGUccUCu-GGAGGAgGCACGgcGGCg -3'
miRNA:   3'- -UAG-GGCG--AGuuCCUCCU-CGUGCa-CCG- -5'
30163 3' -58.2 NC_006273.1 + 166144 0.66 0.873018
Target:  5'- gGUCCUGggC-GGGAGGA-CGCGUGGg -3'
miRNA:   3'- -UAGGGCgaGuUCCUCCUcGUGCACCg -5'
30163 3' -58.2 NC_006273.1 + 147520 0.66 0.870896
Target:  5'- -gCCCGCUCGcucGGGAGGcgaugggGGCGCGccgaugacgacaGGCu -3'
miRNA:   3'- uaGGGCGAGU---UCCUCC-------UCGUGCa-----------CCG- -5'
30163 3' -58.2 NC_006273.1 + 131350 0.67 0.865875
Target:  5'- --aCCGU----GGAGGAGUACGUGcGCa -3'
miRNA:   3'- uagGGCGaguuCCUCCUCGUGCAC-CG- -5'
30163 3' -58.2 NC_006273.1 + 117966 0.67 0.827329
Target:  5'- uUCCCaggCGAGGccGAGCACGgccgGGCa -3'
miRNA:   3'- uAGGGcgaGUUCCucCUCGUGCa---CCG- -5'
30163 3' -58.2 NC_006273.1 + 151813 0.67 0.827329
Target:  5'- aGUCCuCGCgccgCGAGGcGuAGCGCGUGaGCa -3'
miRNA:   3'- -UAGG-GCGa---GUUCCuCcUCGUGCAC-CG- -5'
30163 3' -58.2 NC_006273.1 + 140826 0.68 0.810706
Target:  5'- gAUCCCgggccggaGCcCGGGGAGGAGCGgGgugggGGUg -3'
miRNA:   3'- -UAGGG--------CGaGUUCCUCCUCGUgCa----CCG- -5'
30163 3' -58.2 NC_006273.1 + 35857 0.68 0.810706
Target:  5'- -gUuuGCUC--GGGGGAGCAuCGUGGg -3'
miRNA:   3'- uaGggCGAGuuCCUCCUCGU-GCACCg -5'
30163 3' -58.2 NC_006273.1 + 177182 0.68 0.793478
Target:  5'- -aCCgUGUUCGAGGAGGAGacggUGUGGUc -3'
miRNA:   3'- uaGG-GCGAGUUCCUCCUCgu--GCACCG- -5'
30163 3' -58.2 NC_006273.1 + 55000 0.68 0.775706
Target:  5'- -gCCUGCUCGuaGGuGGGGGGCGCGUcGUc -3'
miRNA:   3'- uaGGGCGAGU--UC-CUCCUCGUGCAcCG- -5'
30163 3' -58.2 NC_006273.1 + 211699 0.7 0.70049
Target:  5'- gGUCaCCaGCguaGAGGAGGAGCagGCGcUGGCc -3'
miRNA:   3'- -UAG-GG-CGag-UUCCUCCUCG--UGC-ACCG- -5'
30163 3' -58.2 NC_006273.1 + 234298 0.7 0.70049
Target:  5'- uUgCCGCUaCucGGAGGGGCGCccGGCg -3'
miRNA:   3'- uAgGGCGA-GuuCCUCCUCGUGcaCCG- -5'
30163 3' -58.2 NC_006273.1 + 39405 0.7 0.70049
Target:  5'- uUgCCGCUaCucGGAGGGGCGCccGGCg -3'
miRNA:   3'- uAgGGCGA-GuuCCUCCUCGUGcaCCG- -5'
30163 3' -58.2 NC_006273.1 + 151975 0.7 0.697576
Target:  5'- uGUCCCGCUCGggcgccgccgggccGGGuGGcGGCggcagcagcccgACGUGGCc -3'
miRNA:   3'- -UAGGGCGAGU--------------UCCuCC-UCG------------UGCACCG- -5'
30163 3' -58.2 NC_006273.1 + 101589 0.7 0.69076
Target:  5'- -gCUCGCUCAGGGAagauaacgacGGAGCGuCGUgacGGCc -3'
miRNA:   3'- uaGGGCGAGUUCCU----------CCUCGU-GCA---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.