Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30163 | 3' | -58.2 | NC_006273.1 | + | 154197 | 1.08 | 0.003004 |
Target: 5'- uAUCCCGCUCAAGGAGGAGCACGUGGCc -3' miRNA: 3'- -UAGGGCGAGUUCCUCCUCGUGCACCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 80371 | 0.76 | 0.38335 |
Target: 5'- -cCCCGCUcCAAGcGGGAGCGgcggcCGUGGCg -3' miRNA: 3'- uaGGGCGA-GUUCcUCCUCGU-----GCACCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 161828 | 0.74 | 0.45087 |
Target: 5'- gGUCCgCGCgUCGGccucuGGAGGAGCACGUGaGUc -3' miRNA: 3'- -UAGG-GCG-AGUU-----CCUCCUCGUGCAC-CG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 84782 | 0.74 | 0.459763 |
Target: 5'- -gCCCGCggUCGAGGAGGAgggGUACGgacuUGGCa -3' miRNA: 3'- uaGGGCG--AGUUCCUCCU---CGUGC----ACCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 203115 | 0.74 | 0.459763 |
Target: 5'- gGUCCCGCUCGucgcguuGAGGAuagucGCGCgGUGGCa -3' miRNA: 3'- -UAGGGCGAGUuc-----CUCCU-----CGUG-CACCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 144180 | 0.74 | 0.46875 |
Target: 5'- --aUCGC-CGAGGcccuGGAGCGCGUGGCc -3' miRNA: 3'- uagGGCGaGUUCCu---CCUCGUGCACCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 165455 | 0.73 | 0.514946 |
Target: 5'- -aCCUGUUCGGGGAGGuGguCGgggGGCa -3' miRNA: 3'- uaGGGCGAGUUCCUCCuCguGCa--CCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 70758 | 0.71 | 0.641584 |
Target: 5'- -gUCCGCcCGAGcAGGuGCGCGUGGUg -3' miRNA: 3'- uaGGGCGaGUUCcUCCuCGUGCACCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 194899 | 0.71 | 0.651463 |
Target: 5'- uGUCCCGCaccggcggcggUCGGGGugugucGGGGGCGCGgcggGGUg -3' miRNA: 3'- -UAGGGCG-----------AGUUCC------UCCUCGUGCa---CCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 234837 | 0.71 | 0.651463 |
Target: 5'- uGUCCCGCaccggcggcggUCGGGGugugucGGGGGCGCGgcggGGUg -3' miRNA: 3'- -UAGGGCG-----------AGUUCC------UCCUCGUGCa---CCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 6 | 0.71 | 0.651463 |
Target: 5'- uGUCCCGCaccggcggcggUCGGGGugugucGGGGGCGCGgcggGGUg -3' miRNA: 3'- -UAGGGCG-----------AGUUCC------UCCUCGUGCa---CCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 196771 | 0.7 | 0.661328 |
Target: 5'- aGUCCUGCUCGGGGuc---CAUGUGGCg -3' miRNA: 3'- -UAGGGCGAGUUCCuccucGUGCACCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 101589 | 0.7 | 0.69076 |
Target: 5'- -gCUCGCUCAGGGAagauaacgacGGAGCGuCGUgacGGCc -3' miRNA: 3'- uaGGGCGAGUUCCU----------CCUCGU-GCA---CCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 151975 | 0.7 | 0.697576 |
Target: 5'- uGUCCCGCUCGggcgccgccgggccGGGuGGcGGCggcagcagcccgACGUGGCc -3' miRNA: 3'- -UAGGGCGAGU--------------UCCuCC-UCG------------UGCACCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 211699 | 0.7 | 0.70049 |
Target: 5'- gGUCaCCaGCguaGAGGAGGAGCagGCGcUGGCc -3' miRNA: 3'- -UAG-GG-CGag-UUCCUCCUCG--UGC-ACCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 39405 | 0.7 | 0.70049 |
Target: 5'- uUgCCGCUaCucGGAGGGGCGCccGGCg -3' miRNA: 3'- uAgGGCGA-GuuCCUCCUCGUGcaCCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 234298 | 0.7 | 0.70049 |
Target: 5'- uUgCCGCUaCucGGAGGGGCGCccGGCg -3' miRNA: 3'- uAgGGCGA-GuuCCUCCUCGUGcaCCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 55000 | 0.68 | 0.775706 |
Target: 5'- -gCCUGCUCGuaGGuGGGGGGCGCGUcGUc -3' miRNA: 3'- uaGGGCGAGU--UC-CUCCUCGUGCAcCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 177182 | 0.68 | 0.793478 |
Target: 5'- -aCCgUGUUCGAGGAGGAGacggUGUGGUc -3' miRNA: 3'- uaGG-GCGAGUUCCUCCUCgu--GCACCG- -5' |
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30163 | 3' | -58.2 | NC_006273.1 | + | 35857 | 0.68 | 0.810706 |
Target: 5'- -gUuuGCUC--GGGGGAGCAuCGUGGg -3' miRNA: 3'- uaGggCGAGuuCCUCCUCGU-GCACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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