miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30163 3' -58.2 NC_006273.1 + 196771 0.7 0.661328
Target:  5'- aGUCCUGCUCGGGGuc---CAUGUGGCg -3'
miRNA:   3'- -UAGGGCGAGUUCCuccucGUGCACCG- -5'
30163 3' -58.2 NC_006273.1 + 234837 0.71 0.651463
Target:  5'- uGUCCCGCaccggcggcggUCGGGGugugucGGGGGCGCGgcggGGUg -3'
miRNA:   3'- -UAGGGCG-----------AGUUCC------UCCUCGUGCa---CCG- -5'
30163 3' -58.2 NC_006273.1 + 6 0.71 0.651463
Target:  5'- uGUCCCGCaccggcggcggUCGGGGugugucGGGGGCGCGgcggGGUg -3'
miRNA:   3'- -UAGGGCG-----------AGUUCC------UCCUCGUGCa---CCG- -5'
30163 3' -58.2 NC_006273.1 + 194899 0.71 0.651463
Target:  5'- uGUCCCGCaccggcggcggUCGGGGugugucGGGGGCGCGgcggGGUg -3'
miRNA:   3'- -UAGGGCG-----------AGUUCC------UCCUCGUGCa---CCG- -5'
30163 3' -58.2 NC_006273.1 + 70758 0.71 0.641584
Target:  5'- -gUCCGCcCGAGcAGGuGCGCGUGGUg -3'
miRNA:   3'- uaGGGCGaGUUCcUCCuCGUGCACCG- -5'
30163 3' -58.2 NC_006273.1 + 165455 0.73 0.514946
Target:  5'- -aCCUGUUCGGGGAGGuGguCGgggGGCa -3'
miRNA:   3'- uaGGGCGAGUUCCUCCuCguGCa--CCG- -5'
30163 3' -58.2 NC_006273.1 + 144180 0.74 0.46875
Target:  5'- --aUCGC-CGAGGcccuGGAGCGCGUGGCc -3'
miRNA:   3'- uagGGCGaGUUCCu---CCUCGUGCACCG- -5'
30163 3' -58.2 NC_006273.1 + 203115 0.74 0.459763
Target:  5'- gGUCCCGCUCGucgcguuGAGGAuagucGCGCgGUGGCa -3'
miRNA:   3'- -UAGGGCGAGUuc-----CUCCU-----CGUG-CACCG- -5'
30163 3' -58.2 NC_006273.1 + 84782 0.74 0.459763
Target:  5'- -gCCCGCggUCGAGGAGGAgggGUACGgacuUGGCa -3'
miRNA:   3'- uaGGGCG--AGUUCCUCCU---CGUGC----ACCG- -5'
30163 3' -58.2 NC_006273.1 + 161828 0.74 0.45087
Target:  5'- gGUCCgCGCgUCGGccucuGGAGGAGCACGUGaGUc -3'
miRNA:   3'- -UAGG-GCG-AGUU-----CCUCCUCGUGCAC-CG- -5'
30163 3' -58.2 NC_006273.1 + 80371 0.76 0.38335
Target:  5'- -cCCCGCUcCAAGcGGGAGCGgcggcCGUGGCg -3'
miRNA:   3'- uaGGGCGA-GUUCcUCCUCGU-----GCACCG- -5'
30163 3' -58.2 NC_006273.1 + 154197 1.08 0.003004
Target:  5'- uAUCCCGCUCAAGGAGGAGCACGUGGCc -3'
miRNA:   3'- -UAGGGCGAGUUCCUCCUCGUGCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.