miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30163 5' -61.8 NC_006273.1 + 98204 0.66 0.792517
Target:  5'- cUCGCUgagCGgcagcgGCGGCaC-CCCGGCUCa- -3'
miRNA:   3'- -GGCGAa--GCa-----CGCCG-GcGGGUCGAGgu -5'
30163 5' -61.8 NC_006273.1 + 39407 0.66 0.792517
Target:  5'- gCCGCUacUCGgagGGgCGCCCGGCggcCCGc -3'
miRNA:   3'- -GGCGA--AGCacgCCgGCGGGUCGa--GGU- -5'
30163 5' -61.8 NC_006273.1 + 234300 0.66 0.792517
Target:  5'- gCCGCUacUCGgagGGgCGCCCGGCggcCCGc -3'
miRNA:   3'- -GGCGA--AGCacgCCgGCGGGUCGa--GGU- -5'
30163 5' -61.8 NC_006273.1 + 124041 0.66 0.783978
Target:  5'- gCCGCUgaacccagCGgcGCGGCCGCgCUAuGCggCCAg -3'
miRNA:   3'- -GGCGAa-------GCa-CGCCGGCG-GGU-CGa-GGU- -5'
30163 5' -61.8 NC_006273.1 + 189764 0.66 0.783978
Target:  5'- gCGC-UCGUGUGGCaGCaaGGCUaCCAg -3'
miRNA:   3'- gGCGaAGCACGCCGgCGggUCGA-GGU- -5'
30163 5' -61.8 NC_006273.1 + 70325 0.66 0.783978
Target:  5'- aCCGCgcCGUGCGuCUGCCCgugAGCaCCGc -3'
miRNA:   3'- -GGCGaaGCACGCcGGCGGG---UCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 38752 0.66 0.783978
Target:  5'- aCCGU--CGUGcCGGCCcaccgccgGCgCAGCUCCc -3'
miRNA:   3'- -GGCGaaGCAC-GCCGG--------CGgGUCGAGGu -5'
30163 5' -61.8 NC_006273.1 + 233644 0.66 0.783978
Target:  5'- aCCGU--CGUGcCGGCCcaccgccgGCgCAGCUCCc -3'
miRNA:   3'- -GGCGaaGCAC-GCCGG--------CGgGUCGAGGu -5'
30163 5' -61.8 NC_006273.1 + 114894 0.66 0.783978
Target:  5'- cCCGCUa-GcGCGGCCgGCaCCGGUUUCGg -3'
miRNA:   3'- -GGCGAagCaCGCCGG-CG-GGUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 223611 0.66 0.783978
Target:  5'- aCGUcgUUCGUG-GGCUGCgguuggCAGCUCCGg -3'
miRNA:   3'- gGCG--AAGCACgCCGGCGg-----GUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 110526 0.66 0.783978
Target:  5'- gCGCUaugCGUGCuGCCGCC--GCUCUu -3'
miRNA:   3'- gGCGAa--GCACGcCGGCGGguCGAGGu -5'
30163 5' -61.8 NC_006273.1 + 110331 0.66 0.783978
Target:  5'- -----cCGUGCGGCgGUCCAGCaUCUg -3'
miRNA:   3'- ggcgaaGCACGCCGgCGGGUCG-AGGu -5'
30163 5' -61.8 NC_006273.1 + 73002 0.66 0.783117
Target:  5'- uUCGCgcaggaagCGUugguagaGaCGGUCGCCCAGCUCgCGa -3'
miRNA:   3'- -GGCGaa------GCA-------C-GCCGGCGGGUCGAG-GU- -5'
30163 5' -61.8 NC_006273.1 + 193136 0.66 0.778797
Target:  5'- uCCGCUUCGaggcccaugguucucUGgcacCGGCCGCCgaAGC-CCAc -3'
miRNA:   3'- -GGCGAAGC---------------AC----GCCGGCGGg-UCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 75703 0.66 0.770071
Target:  5'- aCGCgcccCGUGCGG-CGCUCAGCacgcucaucaucaugUCCGa -3'
miRNA:   3'- gGCGaa--GCACGCCgGCGGGUCG---------------AGGU- -5'
30163 5' -61.8 NC_006273.1 + 33417 0.66 0.76655
Target:  5'- aCCGCcUCGggcgucgGCGGCgCGCgaCAGCcCCGg -3'
miRNA:   3'- -GGCGaAGCa------CGCCG-GCGg-GUCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 73174 0.66 0.765667
Target:  5'- gCCGCUUccuccggcugcagCGcaccGCGGCCGaucaCCAGCUgCAc -3'
miRNA:   3'- -GGCGAA-------------GCa---CGCCGGCg---GGUCGAgGU- -5'
30163 5' -61.8 NC_006273.1 + 158370 0.66 0.757676
Target:  5'- gCGCggCGUGCGcacGCCGCUCAcGCUagaCAu -3'
miRNA:   3'- gGCGaaGCACGC---CGGCGGGU-CGAg--GU- -5'
30163 5' -61.8 NC_006273.1 + 45590 0.66 0.757676
Target:  5'- gCCGUgcaG-GCGGCCaugGCCgCGGCUCUAc -3'
miRNA:   3'- -GGCGaagCaCGCCGG---CGG-GUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 56718 0.66 0.757676
Target:  5'- aCCGCggUCGUGCuucuuGCCGCCaccGCcgCCAc -3'
miRNA:   3'- -GGCGa-AGCACGc----CGGCGGgu-CGa-GGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.