miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30163 5' -61.8 NC_006273.1 + 154232 1.1 0.001341
Target:  5'- aCCGCUUCGUGCGGCCGCCCAGCUCCAu -3'
miRNA:   3'- -GGCGAAGCACGCCGGCGGGUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 86880 0.75 0.275602
Target:  5'- gUCGCguagCG-GCGGCUGCCCAGCgaaaCCAc -3'
miRNA:   3'- -GGCGaa--GCaCGCCGGCGGGUCGa---GGU- -5'
30163 5' -61.8 NC_006273.1 + 165687 0.74 0.348882
Target:  5'- gCCGCUgccuacgcgaUCG-GCGGCCG-UCAGCUCCu -3'
miRNA:   3'- -GGCGA----------AGCaCGCCGGCgGGUCGAGGu -5'
30163 5' -61.8 NC_006273.1 + 141288 0.73 0.371137
Target:  5'- uCC-CUagGUGCGGCCGCCCAGUg--- -3'
miRNA:   3'- -GGcGAagCACGCCGGCGGGUCGaggu -5'
30163 5' -61.8 NC_006273.1 + 23673 0.73 0.386502
Target:  5'- gCGCUcCGUGCGGCC-CCCAGaggCCc -3'
miRNA:   3'- gGCGAaGCACGCCGGcGGGUCga-GGu -5'
30163 5' -61.8 NC_006273.1 + 31284 0.73 0.394341
Target:  5'- gCCGUUcggggCGUGCGGCCGCgCUAgcGCUUCAc -3'
miRNA:   3'- -GGCGAa----GCACGCCGGCG-GGU--CGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 101614 0.72 0.402281
Target:  5'- -aGCgUCGUGaCGGCCGCgugagugCAGCUCCAu -3'
miRNA:   3'- ggCGaAGCAC-GCCGGCGg------GUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 76068 0.72 0.405486
Target:  5'- aCCGCUUCGUGCaGCUGCuuuucuauaugugggCCGGCaCCGg -3'
miRNA:   3'- -GGCGAAGCACGcCGGCG---------------GGUCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 103522 0.72 0.45198
Target:  5'- gCGUgccgUCGaUGCGGCCGCCgUAGCcggCCAg -3'
miRNA:   3'- gGCGa---AGC-ACGCCGGCGG-GUCGa--GGU- -5'
30163 5' -61.8 NC_006273.1 + 173722 0.71 0.495843
Target:  5'- uCCGCUUUGUccGUGGCCcguGCCCGcagcuGCUCUAu -3'
miRNA:   3'- -GGCGAAGCA--CGCCGG---CGGGU-----CGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 122099 0.7 0.532271
Target:  5'- gUCGCgucUCGUGCGGCaGCaCCGGCguaucgCCGc -3'
miRNA:   3'- -GGCGa--AGCACGCCGgCG-GGUCGa-----GGU- -5'
30163 5' -61.8 NC_006273.1 + 214065 0.7 0.541532
Target:  5'- uCCGCUcgCGguUGCGGUCGCgcaCCGGCUgCAg -3'
miRNA:   3'- -GGCGAa-GC--ACGCCGGCG---GGUCGAgGU- -5'
30163 5' -61.8 NC_006273.1 + 56405 0.7 0.545252
Target:  5'- aCCGCgcCGUGCGcacguucccaggcacGCgGCCCAcGCUCUAg -3'
miRNA:   3'- -GGCGaaGCACGC---------------CGgCGGGU-CGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 103777 0.69 0.569616
Target:  5'- aCCGCgcgCGUGCcaGGCCGUgCGGUaggCCAg -3'
miRNA:   3'- -GGCGaa-GCACG--CCGGCGgGUCGa--GGU- -5'
30163 5' -61.8 NC_006273.1 + 52247 0.69 0.569616
Target:  5'- cCCGagUCGUGCcGCaGCCUGGCUCCGc -3'
miRNA:   3'- -GGCgaAGCACGcCGgCGGGUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 133308 0.69 0.588538
Target:  5'- cCCGC---GUGUGGCCGCCgCuGCUCgAg -3'
miRNA:   3'- -GGCGaagCACGCCGGCGG-GuCGAGgU- -5'
30163 5' -61.8 NC_006273.1 + 93607 0.69 0.588538
Target:  5'- aCCGCggcuugagCG-GCGGCCuGCgCAGCUUCGc -3'
miRNA:   3'- -GGCGaa------GCaCGCCGG-CGgGUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 94034 0.69 0.598044
Target:  5'- uUGCUgca--CGGCCGCCCGuuGCUCCAa -3'
miRNA:   3'- gGCGAagcacGCCGGCGGGU--CGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 168540 0.69 0.607571
Target:  5'- gCUGCUgcacuUCGgguagcUGCaGGCCGCCUAGCgcuUCCAg -3'
miRNA:   3'- -GGCGA-----AGC------ACG-CCGGCGGGUCG---AGGU- -5'
30163 5' -61.8 NC_006273.1 + 112559 0.69 0.607571
Target:  5'- gUCGCcgCGUcaGCGGCCGCCgGuGCUUCu -3'
miRNA:   3'- -GGCGaaGCA--CGCCGGCGGgU-CGAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.