miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30163 5' -61.8 NC_006273.1 + 144395 0.66 0.757676
Target:  5'- -gGcCUUCGUcaGCGGCUgucuGCCCGGCgCCGc -3'
miRNA:   3'- ggC-GAAGCA--CGCCGG----CGGGUCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 56718 0.66 0.757676
Target:  5'- aCCGCggUCGUGCuucuuGCCGCCaccGCcgCCAc -3'
miRNA:   3'- -GGCGa-AGCACGc----CGGCGGgu-CGa-GGU- -5'
30163 5' -61.8 NC_006273.1 + 214868 0.66 0.748706
Target:  5'- aCGUacUCGcGUGGCCGUCUGGCUCaCGa -3'
miRNA:   3'- gGCGa-AGCaCGCCGGCGGGUCGAG-GU- -5'
30163 5' -61.8 NC_006273.1 + 193144 0.66 0.739646
Target:  5'- gUCGacacgUGUGCGGCCuGCUguGCUCUg -3'
miRNA:   3'- -GGCgaa--GCACGCCGG-CGGguCGAGGu -5'
30163 5' -61.8 NC_006273.1 + 98133 0.67 0.721288
Target:  5'- aCCGCUcUCGUuccGCGGuCCGaaaagCAGCUCCu -3'
miRNA:   3'- -GGCGA-AGCA---CGCC-GGCgg---GUCGAGGu -5'
30163 5' -61.8 NC_006273.1 + 153353 0.67 0.721288
Target:  5'- gCCGCUUCGUccgaggccgGCGGCaCGCgCguGC-CCu -3'
miRNA:   3'- -GGCGAAGCA---------CGCCG-GCG-GguCGaGGu -5'
30163 5' -61.8 NC_006273.1 + 80948 0.67 0.721288
Target:  5'- -gGCUgCG-GCGaGUCGCCCAGCgggucggCCAg -3'
miRNA:   3'- ggCGAaGCaCGC-CGGCGGGUCGa------GGU- -5'
30163 5' -61.8 NC_006273.1 + 156454 0.67 0.720363
Target:  5'- gUCGCUcCGUGCGGUCGgUCAucauucuGCUUCAc -3'
miRNA:   3'- -GGCGAaGCACGCCGGCgGGU-------CGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 61577 0.67 0.711074
Target:  5'- gCCGggUCGcGCGGCCGUuuGGCcaccgcgcgcgcgUCCAu -3'
miRNA:   3'- -GGCgaAGCaCGCCGGCGggUCG-------------AGGU- -5'
30163 5' -61.8 NC_006273.1 + 75267 0.67 0.711074
Target:  5'- gCCGCcgCG-GCGGCCGCCUcauaccaGGUgaaUCCu -3'
miRNA:   3'- -GGCGaaGCaCGCCGGCGGG-------UCG---AGGu -5'
30163 5' -61.8 NC_006273.1 + 635 0.67 0.702664
Target:  5'- gCGCUUUcUGCGcGCUGCCggugcgugUGGCUCCAc -3'
miRNA:   3'- gGCGAAGcACGC-CGGCGG--------GUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 13601 0.67 0.702664
Target:  5'- gCCGC--CGUGCuggagGGCCGCCCcacGC-CCAa -3'
miRNA:   3'- -GGCGaaGCACG-----CCGGCGGGu--CGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 40573 0.67 0.702664
Target:  5'- gCGCUUUcUGCGcGCUGCCggugcgugUGGCUCCAc -3'
miRNA:   3'- gGCGAAGcACGC-CGGCGG--------GUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 82756 0.67 0.702664
Target:  5'- gCGCaaUUUGUacgcGCGGCCGUgCAGCgggCCAc -3'
miRNA:   3'- gGCG--AAGCA----CGCCGGCGgGUCGa--GGU- -5'
30163 5' -61.8 NC_006273.1 + 67736 0.67 0.69327
Target:  5'- cCCGC--CGuUGCGGCCGCC--GCUCaCAg -3'
miRNA:   3'- -GGCGaaGC-ACGCCGGCGGguCGAG-GU- -5'
30163 5' -61.8 NC_006273.1 + 40927 0.67 0.692328
Target:  5'- gCGCUcgggcggacgCGUGCGGCgucgcgacucgcuUGCCCAGCaCCGg -3'
miRNA:   3'- gGCGAa---------GCACGCCG-------------GCGGGUCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 202040 0.67 0.683832
Target:  5'- gCCGCaggaUCGcacGCGGCUGCCgCAGUUCa- -3'
miRNA:   3'- -GGCGa---AGCa--CGCCGGCGG-GUCGAGgu -5'
30163 5' -61.8 NC_006273.1 + 187293 0.68 0.673407
Target:  5'- aUGCggcgUCGUugccgggGCGGCUGCuCCAGgUCCGc -3'
miRNA:   3'- gGCGa---AGCA-------CGCCGGCG-GGUCgAGGU- -5'
30163 5' -61.8 NC_006273.1 + 185679 0.68 0.668657
Target:  5'- gCCGUUUCGUcggacgugGCguaaaaaaccgagguGGUCGCCCAGUcgUCCAc -3'
miRNA:   3'- -GGCGAAGCA--------CG---------------CCGGCGGGUCG--AGGU- -5'
30163 5' -61.8 NC_006273.1 + 153778 0.68 0.664851
Target:  5'- gCCGCUUCGgccuccgccGCGGCCGC--GGCcgCCGc -3'
miRNA:   3'- -GGCGAAGCa--------CGCCGGCGggUCGa-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.