miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30163 5' -61.8 NC_006273.1 + 635 0.67 0.702664
Target:  5'- gCGCUUUcUGCGcGCUGCCggugcgugUGGCUCCAc -3'
miRNA:   3'- gGCGAAGcACGC-CGGCGG--------GUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 13601 0.67 0.702664
Target:  5'- gCCGC--CGUGCuggagGGCCGCCCcacGC-CCAa -3'
miRNA:   3'- -GGCGaaGCACG-----CCGGCGGGu--CGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 23673 0.73 0.386502
Target:  5'- gCGCUcCGUGCGGCC-CCCAGaggCCc -3'
miRNA:   3'- gGCGAaGCACGCCGGcGGGUCga-GGu -5'
30163 5' -61.8 NC_006273.1 + 30671 0.69 0.617114
Target:  5'- gCgGCUUCcUGCGGCCGgCCgCGGUgCCGg -3'
miRNA:   3'- -GgCGAAGcACGCCGGC-GG-GUCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 31284 0.73 0.394341
Target:  5'- gCCGUUcggggCGUGCGGCCGCgCUAgcGCUUCAc -3'
miRNA:   3'- -GGCGAa----GCACGCCGGCG-GGU--CGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 33417 0.66 0.76655
Target:  5'- aCCGCcUCGggcgucgGCGGCgCGCgaCAGCcCCGg -3'
miRNA:   3'- -GGCGaAGCa------CGCCG-GCGg-GUCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 38752 0.66 0.783978
Target:  5'- aCCGU--CGUGcCGGCCcaccgccgGCgCAGCUCCc -3'
miRNA:   3'- -GGCGaaGCAC-GCCGG--------CGgGUCGAGGu -5'
30163 5' -61.8 NC_006273.1 + 39407 0.66 0.792517
Target:  5'- gCCGCUacUCGgagGGgCGCCCGGCggcCCGc -3'
miRNA:   3'- -GGCGA--AGCacgCCgGCGGGUCGa--GGU- -5'
30163 5' -61.8 NC_006273.1 + 40573 0.67 0.702664
Target:  5'- gCGCUUUcUGCGcGCUGCCggugcgugUGGCUCCAc -3'
miRNA:   3'- gGCGAAGcACGC-CGGCGG--------GUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 40927 0.67 0.692328
Target:  5'- gCGCUcgggcggacgCGUGCGGCgucgcgacucgcuUGCCCAGCaCCGg -3'
miRNA:   3'- gGCGAa---------GCACGCCG-------------GCGGGUCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 45590 0.66 0.757676
Target:  5'- gCCGUgcaG-GCGGCCaugGCCgCGGCUCUAc -3'
miRNA:   3'- -GGCGaagCaCGCCGG---CGG-GUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 52247 0.69 0.569616
Target:  5'- cCCGagUCGUGCcGCaGCCUGGCUCCGc -3'
miRNA:   3'- -GGCgaAGCACGcCGgCGGGUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 56405 0.7 0.545252
Target:  5'- aCCGCgcCGUGCGcacguucccaggcacGCgGCCCAcGCUCUAg -3'
miRNA:   3'- -GGCGaaGCACGC---------------CGgCGGGU-CGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 56718 0.66 0.757676
Target:  5'- aCCGCggUCGUGCuucuuGCCGCCaccGCcgCCAc -3'
miRNA:   3'- -GGCGa-AGCACGc----CGGCGGgu-CGa-GGU- -5'
30163 5' -61.8 NC_006273.1 + 61577 0.67 0.711074
Target:  5'- gCCGggUCGcGCGGCCGUuuGGCcaccgcgcgcgcgUCCAu -3'
miRNA:   3'- -GGCgaAGCaCGCCGGCGggUCG-------------AGGU- -5'
30163 5' -61.8 NC_006273.1 + 67736 0.67 0.69327
Target:  5'- cCCGC--CGuUGCGGCCGCC--GCUCaCAg -3'
miRNA:   3'- -GGCGaaGC-ACGCCGGCGGguCGAG-GU- -5'
30163 5' -61.8 NC_006273.1 + 70325 0.66 0.783978
Target:  5'- aCCGCgcCGUGCGuCUGCCCgugAGCaCCGc -3'
miRNA:   3'- -GGCGaaGCACGCcGGCGGG---UCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 73002 0.66 0.783117
Target:  5'- uUCGCgcaggaagCGUugguagaGaCGGUCGCCCAGCUCgCGa -3'
miRNA:   3'- -GGCGaa------GCA-------C-GCCGGCGGGUCGAG-GU- -5'
30163 5' -61.8 NC_006273.1 + 73174 0.66 0.765667
Target:  5'- gCCGCUUccuccggcugcagCGcaccGCGGCCGaucaCCAGCUgCAc -3'
miRNA:   3'- -GGCGAA-------------GCa---CGCCGGCg---GGUCGAgGU- -5'
30163 5' -61.8 NC_006273.1 + 75267 0.67 0.711074
Target:  5'- gCCGCcgCG-GCGGCCGCCUcauaccaGGUgaaUCCu -3'
miRNA:   3'- -GGCGaaGCaCGCCGGCGGG-------UCG---AGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.