miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30163 5' -61.8 NC_006273.1 + 153353 0.67 0.721288
Target:  5'- gCCGCUUCGUccgaggccgGCGGCaCGCgCguGC-CCu -3'
miRNA:   3'- -GGCGAAGCA---------CGCCG-GCG-GguCGaGGu -5'
30163 5' -61.8 NC_006273.1 + 153778 0.68 0.664851
Target:  5'- gCCGCUUCGgccuccgccGCGGCCGC--GGCcgCCGc -3'
miRNA:   3'- -GGCGAAGCa--------CGCCGGCGggUCGa-GGU- -5'
30163 5' -61.8 NC_006273.1 + 189875 0.68 0.664851
Target:  5'- aCGCgUCGgGCGGaCCGCCgGGCaucgCCGu -3'
miRNA:   3'- gGCGaAGCaCGCC-GGCGGgUCGa---GGU- -5'
30163 5' -61.8 NC_006273.1 + 185679 0.68 0.668657
Target:  5'- gCCGUUUCGUcggacgugGCguaaaaaaccgagguGGUCGCCCAGUcgUCCAc -3'
miRNA:   3'- -GGCGAAGCA--------CG---------------CCGGCGGGUCG--AGGU- -5'
30163 5' -61.8 NC_006273.1 + 40927 0.67 0.692328
Target:  5'- gCGCUcgggcggacgCGUGCGGCgucgcgacucgcuUGCCCAGCaCCGg -3'
miRNA:   3'- gGCGAa---------GCACGCCG-------------GCGGGUCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 635 0.67 0.702664
Target:  5'- gCGCUUUcUGCGcGCUGCCggugcgugUGGCUCCAc -3'
miRNA:   3'- gGCGAAGcACGC-CGGCGG--------GUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 61577 0.67 0.711074
Target:  5'- gCCGggUCGcGCGGCCGUuuGGCcaccgcgcgcgcgUCCAu -3'
miRNA:   3'- -GGCgaAGCaCGCCGGCGggUCG-------------AGGU- -5'
30163 5' -61.8 NC_006273.1 + 75267 0.67 0.711074
Target:  5'- gCCGCcgCG-GCGGCCGCCUcauaccaGGUgaaUCCu -3'
miRNA:   3'- -GGCGaaGCaCGCCGGCGGG-------UCG---AGGu -5'
30163 5' -61.8 NC_006273.1 + 156454 0.67 0.720363
Target:  5'- gUCGCUcCGUGCGGUCGgUCAucauucuGCUUCAc -3'
miRNA:   3'- -GGCGAaGCACGCCGGCgGGU-------CGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 101453 0.68 0.664851
Target:  5'- uCCGCgagaugguaUUCGcugGCGGCUGCUCcGUUCCGu -3'
miRNA:   3'- -GGCG---------AAGCa--CGCCGGCGGGuCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 112559 0.69 0.607571
Target:  5'- gUCGCcgCGUcaGCGGCCGCCgGuGCUUCu -3'
miRNA:   3'- -GGCGaaGCA--CGCCGGCGGgU-CGAGGu -5'
30163 5' -61.8 NC_006273.1 + 52247 0.69 0.569616
Target:  5'- cCCGagUCGUGCcGCaGCCUGGCUCCGc -3'
miRNA:   3'- -GGCgaAGCACGcCGgCGGGUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 23673 0.73 0.386502
Target:  5'- gCGCUcCGUGCGGCC-CCCAGaggCCc -3'
miRNA:   3'- gGCGAaGCACGCCGGcGGGUCga-GGu -5'
30163 5' -61.8 NC_006273.1 + 31284 0.73 0.394341
Target:  5'- gCCGUUcggggCGUGCGGCCGCgCUAgcGCUUCAc -3'
miRNA:   3'- -GGCGAa----GCACGCCGGCG-GGU--CGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 101614 0.72 0.402281
Target:  5'- -aGCgUCGUGaCGGCCGCgugagugCAGCUCCAu -3'
miRNA:   3'- ggCGaAGCAC-GCCGGCGg------GUCGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 76068 0.72 0.405486
Target:  5'- aCCGCUUCGUGCaGCUGCuuuucuauaugugggCCGGCaCCGg -3'
miRNA:   3'- -GGCGAAGCACGcCGGCG---------------GGUCGaGGU- -5'
30163 5' -61.8 NC_006273.1 + 103522 0.72 0.45198
Target:  5'- gCGUgccgUCGaUGCGGCCGCCgUAGCcggCCAg -3'
miRNA:   3'- gGCGa---AGC-ACGCCGGCGG-GUCGa--GGU- -5'
30163 5' -61.8 NC_006273.1 + 122099 0.7 0.532271
Target:  5'- gUCGCgucUCGUGCGGCaGCaCCGGCguaucgCCGc -3'
miRNA:   3'- -GGCGa--AGCACGCCGgCG-GGUCGa-----GGU- -5'
30163 5' -61.8 NC_006273.1 + 56405 0.7 0.545252
Target:  5'- aCCGCgcCGUGCGcacguucccaggcacGCgGCCCAcGCUCUAg -3'
miRNA:   3'- -GGCGaaGCACGC---------------CGgCGGGU-CGAGGU- -5'
30163 5' -61.8 NC_006273.1 + 103777 0.69 0.569616
Target:  5'- aCCGCgcgCGUGCcaGGCCGUgCGGUaggCCAg -3'
miRNA:   3'- -GGCGaa-GCACG--CCGGCGgGUCGa--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.