miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30164 3' -51.8 NC_006273.1 + 161806 0.66 0.9969
Target:  5'- gCGGCGGGccaGGAcaucggaggguccgcGCGUcGGCCucuGGAGGAg -3'
miRNA:   3'- -GUUGCCUa--CCU---------------UGUA-CCGGu--UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 140261 0.66 0.996131
Target:  5'- gGGCGGAguuuuuuuggGGAGCAgUGGggGAGGGGAg -3'
miRNA:   3'- gUUGCCUa---------CCUUGU-ACCggUUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 140959 0.66 0.996131
Target:  5'- gAGCGGggGGAggGCAgggacccccGGCCGAGGuccGGAg -3'
miRNA:   3'- gUUGCCuaCCU--UGUa--------CCGGUUCU---CCU- -5'
30164 3' -51.8 NC_006273.1 + 175207 0.66 0.99607
Target:  5'- gCGACcaGGAUGGAGC-UGGaCAgugucgaGGAGGAg -3'
miRNA:   3'- -GUUG--CCUACCUUGuACCgGU-------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 210658 0.66 0.99549
Target:  5'- cUAGCGcc-GGGAUGUGcGCCAGGAGGc -3'
miRNA:   3'- -GUUGCcuaCCUUGUAC-CGGUUCUCCu -5'
30164 3' -51.8 NC_006273.1 + 154583 0.66 0.99549
Target:  5'- uCAGgGGAUcccaaacgGGAACgAUGGCCGgggcugcacuucGGAGGGu -3'
miRNA:   3'- -GUUgCCUA--------CCUUG-UACCGGU------------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 109690 0.66 0.993864
Target:  5'- gGGCGGcgGGAACGguagcggggacggUGGCaucGGGGAa -3'
miRNA:   3'- gUUGCCuaCCUUGU-------------ACCGguuCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 141064 0.66 0.993864
Target:  5'- gGACGGAccGGcGCcgGGCCucggccgGGGAGGGu -3'
miRNA:   3'- gUUGCCUa-CCuUGuaCCGG-------UUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 162257 0.67 0.993036
Target:  5'- gCAGCGGcgGGAcucGCGacGGCCcuucugcGGAGGAa -3'
miRNA:   3'- -GUUGCCuaCCU---UGUa-CCGGu------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 140693 0.67 0.993036
Target:  5'- aCGGCGGGUGGuggugGugGUGGUgGAGuGGu -3'
miRNA:   3'- -GUUGCCUACC-----UugUACCGgUUCuCCu -5'
30164 3' -51.8 NC_006273.1 + 7696 0.67 0.993036
Target:  5'- gGGCGGcgGcGGCAgUGGCCGcggcagcggGGAGGAg -3'
miRNA:   3'- gUUGCCuaCcUUGU-ACCGGU---------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 65348 0.67 0.992013
Target:  5'- -uACGaGAUGGGAUGUacGGgCGGGGGGAg -3'
miRNA:   3'- guUGC-CUACCUUGUA--CCgGUUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 177289 0.67 0.992013
Target:  5'- --gUGGuUGGAGCAgcaCCAGGAGGAg -3'
miRNA:   3'- guuGCCuACCUUGUaccGGUUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 125202 0.67 0.992013
Target:  5'- aUAGCGGcgGuGAAauccUGGCCGcgacGGAGGAg -3'
miRNA:   3'- -GUUGCCuaC-CUUgu--ACCGGU----UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 1148 0.67 0.990876
Target:  5'- -uGCGGcgGGGACgGUGGUgAGGAcGGGg -3'
miRNA:   3'- guUGCCuaCCUUG-UACCGgUUCU-CCU- -5'
30164 3' -51.8 NC_006273.1 + 41086 0.67 0.990876
Target:  5'- -uGCGGcgGGGACgGUGGUgAGGAcGGGg -3'
miRNA:   3'- guUGCCuaCCUUG-UACCGgUUCU-CCU- -5'
30164 3' -51.8 NC_006273.1 + 63751 0.67 0.989614
Target:  5'- --uCGGucUGGcGCGUGGCCGggcgcgccucucGGAGGAc -3'
miRNA:   3'- guuGCCu-ACCuUGUACCGGU------------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 103112 0.68 0.986686
Target:  5'- uGACGGAgguUGGGACAgaagGGac-GGAGGAa -3'
miRNA:   3'- gUUGCCU---ACCUUGUa---CCgguUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 101321 0.68 0.985002
Target:  5'- uGGCGGGaGGAGgGUGGaagGGGAGGAg -3'
miRNA:   3'- gUUGCCUaCCUUgUACCgg-UUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 83338 0.68 0.983161
Target:  5'- cCGGCGuGGUGGGACccGGCgGcgccguggugGGAGGAc -3'
miRNA:   3'- -GUUGC-CUACCUUGuaCCGgU----------UCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.