miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30164 3' -51.8 NC_006273.1 + 189844 0.68 0.980943
Target:  5'- --cCGGGUGGcaucugcGGCAUGGC-GGGGGGAg -3'
miRNA:   3'- guuGCCUACC-------UUGUACCGgUUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 143779 0.68 0.978973
Target:  5'- --cUGGAcgcGGAACGUGacgguuGCCGAGGGGAa -3'
miRNA:   3'- guuGCCUa--CCUUGUAC------CGGUUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 67405 0.68 0.978973
Target:  5'- gAACGGcUGGAACGugaaUGGCaagAAGAGGc -3'
miRNA:   3'- gUUGCCuACCUUGU----ACCGg--UUCUCCu -5'
30164 3' -51.8 NC_006273.1 + 3446 0.69 0.97661
Target:  5'- gCGACGGAgaGGAGCGUGuccGCCGccGGGAa -3'
miRNA:   3'- -GUUGCCUa-CCUUGUAC---CGGUucUCCU- -5'
30164 3' -51.8 NC_006273.1 + 80809 0.69 0.975102
Target:  5'- gGACGGAgGGGuuguugguggcaacgACGUGGCCGcGGGGc -3'
miRNA:   3'- gUUGCCUaCCU---------------UGUACCGGUuCUCCu -5'
30164 3' -51.8 NC_006273.1 + 93835 0.69 0.974058
Target:  5'- -cGCGGAuuaUGGGAUGUGGCCucGAGu- -3'
miRNA:   3'- guUGCCU---ACCUUGUACCGGuuCUCcu -5'
30164 3' -51.8 NC_006273.1 + 122652 0.69 0.974058
Target:  5'- gCGACGGcgaAUGGGACGUGGaCCGcGAGu- -3'
miRNA:   3'- -GUUGCC---UACCUUGUACC-GGUuCUCcu -5'
30164 3' -51.8 NC_006273.1 + 149562 0.69 0.97131
Target:  5'- aUAACGG-UGGcggcGGCcgGGCCcguGGAGGAg -3'
miRNA:   3'- -GUUGCCuACC----UUGuaCCGGu--UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 44415 0.69 0.97131
Target:  5'- -cACGGA-GGAaguuACGUGGgUAGGAGGGc -3'
miRNA:   3'- guUGCCUaCCU----UGUACCgGUUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 82485 0.69 0.968359
Target:  5'- -cACGGugcGGcGCGUGGCCGAGGaguGGAa -3'
miRNA:   3'- guUGCCua-CCuUGUACCGGUUCU---CCU- -5'
30164 3' -51.8 NC_006273.1 + 71611 0.69 0.968359
Target:  5'- -cGCGGuguuagacAUGGGGCA-GGCCGugGGGGGAg -3'
miRNA:   3'- guUGCC--------UACCUUGUaCCGGU--UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 140798 0.69 0.96712
Target:  5'- cCGGCGGAggucgccgGGAGCAgcgagggaucccgGGCCGgagcccggGGAGGAg -3'
miRNA:   3'- -GUUGCCUa-------CCUUGUa------------CCGGU--------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 160290 0.7 0.961822
Target:  5'- gCGACGGAgcugGuGGACggGGCCGggcuggucGGGGGAa -3'
miRNA:   3'- -GUUGCCUa---C-CUUGuaCCGGU--------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 138471 0.7 0.958225
Target:  5'- cCGAUGuGUGGGACcUGGUCAagguAGAGGAa -3'
miRNA:   3'- -GUUGCcUACCUUGuACCGGU----UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 156264 0.7 0.95035
Target:  5'- aCGGCGGGUGGAgGCGcgGGUCAucuacGGGGAc -3'
miRNA:   3'- -GUUGCCUACCU-UGUa-CCGGUu----CUCCU- -5'
30164 3' -51.8 NC_006273.1 + 230517 0.7 0.947374
Target:  5'- gGACGGAUGGGgagaacgGCgggacuuagccgcccGUGGCCGGGAGa- -3'
miRNA:   3'- gUUGCCUACCU-------UG---------------UACCGGUUCUCcu -5'
30164 3' -51.8 NC_006273.1 + 207335 0.71 0.93178
Target:  5'- -cACGGGUGGGGguuucucuuucuUAUGGCCGAGuGGc -3'
miRNA:   3'- guUGCCUACCUU------------GUACCGGUUCuCCu -5'
30164 3' -51.8 NC_006273.1 + 199965 0.72 0.91533
Target:  5'- --uCGGcucGUGGAACGUGGCCGAGGc-- -3'
miRNA:   3'- guuGCC---UACCUUGUACCGGUUCUccu -5'
30164 3' -51.8 NC_006273.1 + 193642 0.72 0.91533
Target:  5'- aCAGCGcGUGGGACGUgaGGCCGcucacggagaccAGAGGGg -3'
miRNA:   3'- -GUUGCcUACCUUGUA--CCGGU------------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 40638 0.72 0.896723
Target:  5'- aGACGGG-GGGGCAcucuUGGCCGGGGacGGAg -3'
miRNA:   3'- gUUGCCUaCCUUGU----ACCGGUUCU--CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.